Gene annotation
Transcriptome id Sobic.001G122832.1
Synonym -
Functional annotation -
UniProt A0A1Z5S5R2
Pfam PF14531
Panther DB PTHR24361 PTHR24361:SF404
NCBI CDD KOG0198; MEKK and related serine/threonine protein kinases
KEGG Orthology K13414; mitogen-activated protein kinase kinase kinase 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G08500 : MAPK/ERK kinase kinase 1
RAP-DB (Rice) LOC_Os03g49640.1 : STE_MEKK_ste11_MAP3K.14 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MaizeGDB (Corn) Zm00025a017047 , Zm00025a007765
Brachypodium KQK13560
Barley HORVU4Hr1G006660.1
Wheat TraesCS4A02G272500 , TraesCS4B02G041600 , TraesCS4D02G038900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.001G332500 WRKY81, expressed -
3 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
4 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
5 Sobic.003G411900 auxin response factor 2(PubMedID : 26465154)@auxin response factor 2(PubMedID : 26465154)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@"OsARF4(Ortholog in rice:Hu et al., 2018)"(PubMedID : 31659874)@Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@auxin response factor, putative, expressed -
6 Sobic.003G316500 expressed protein -
7 Sobic.010G223700 MYB transcription factor, putative, expressed -
8 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.002G211800 AT-rich interaction region, putative, expressed -
10 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.001G389100 DUF630/DUF632 domains containing protein, putative, expressed -
12 Sobic.010G143800 expressed protein -
13 Sobic.002G134600 nucleic acid binding protein, putative, expressed -
14 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
15 Sobic.001G451400 HEAT repeat family protein, putative, expressed K15305: VAC14, vacuole morphology and inheritance protein 14
16 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
17 Sobic.010G074300 smr domain containing protein, expressed -
18 Sobic.003G372500 DUF803 domain containing, putative, expressed -
19 Sobic.003G435200 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
20 Sobic.001G126100 OsFBO16 - F-box and other domain containing protein, expressed -


Gene co-expression network
sample Sobic001G122832 Sobic001G122832 Sobic003G221900 Sobic003G221900 Sobic001G122832--Sobic003G221900 Sobic001G332500 Sobic001G332500 Sobic001G122832--Sobic001G332500 Sobic005G027400 Sobic005G027400 Sobic001G122832--Sobic005G027400 Sobic003G029700 Sobic003G029700 Sobic001G122832--Sobic003G029700 Sobic003G411900 Sobic003G411900 Sobic001G122832--Sobic003G411900 Sobic003G316500 Sobic003G316500 Sobic001G122832--Sobic003G316500 Sobic010G223700 Sobic010G223700 Sobic001G122832--Sobic010G223700 Sobic002G294800 Sobic002G294800 Sobic001G122832--Sobic002G294800 Sobic002G211800 Sobic002G211800 Sobic001G122832--Sobic002G211800 Sobic003G221900--Sobic001G122832 Sobic003G221900--Sobic003G316500 Sobic003G340600 Sobic003G340600 Sobic003G221900--Sobic003G340600 Sobic001G389100 Sobic001G389100 Sobic003G221900--Sobic001G389100 Sobic010G021500 Sobic010G021500 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic010G147100 Sobic010G147100 Sobic003G221900--Sobic010G147100 Sobic003G221900--Sobic001G332500 Sobic003G221900--Sobic003G029700 Sobic001G080700 Sobic001G080700 Sobic001G332500--Sobic001G080700 Sobic001G332500--Sobic001G122832 Sobic003G253600 Sobic003G253600 Sobic001G332500--Sobic003G253600 Sobic001G375700 Sobic001G375700 Sobic001G332500--Sobic001G375700 Sobic001G392300 Sobic001G392300 Sobic001G332500--Sobic001G392300 Sobic001G332500--Sobic003G221900 Sobic007G136800 Sobic007G136800 Sobic001G332500--Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic001G332500--Sobic003G398700 Sobic006G185100 Sobic006G185100 Sobic001G332500--Sobic006G185100 Sobic002G309600 Sobic002G309600 Sobic005G027400--Sobic002G309600 Sobic004G065100 Sobic004G065100 Sobic005G027400--Sobic004G065100 Sobic001G451400 Sobic001G451400 Sobic005G027400--Sobic001G451400 Sobic009G132700 Sobic009G132700 Sobic005G027400--Sobic009G132700 Sobic007G117400 Sobic007G117400 Sobic005G027400--Sobic007G117400 Sobic001G219600 Sobic001G219600 Sobic005G027400--Sobic001G219600 Sobic001G289800 Sobic001G289800 Sobic005G027400--Sobic001G289800 Sobic008G047800 Sobic008G047800 Sobic005G027400--Sobic008G047800 Sobic004G006900 Sobic004G006900 Sobic005G027400--Sobic004G006900 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200 Sobic001G365900 Sobic001G365900 Sobic003G411900--Sobic001G365900 Sobic003G411900--Sobic003G029700 Sobic007G207000 Sobic007G207000 Sobic003G411900--Sobic007G207000 Sobic003G411900--Sobic001G122832 Sobic001G125200 Sobic001G125200 Sobic003G411900--Sobic001G125200 Sobic003G411900--Sobic001G205200 Sobic003G411900--Sobic009G026500 Sobic003G372500 Sobic003G372500 Sobic003G411900--Sobic003G372500 Sobic001G191600 Sobic001G191600 Sobic003G411900--Sobic001G191600 Sobic001G534700 Sobic001G534700 Sobic003G316500--Sobic001G534700 Sobic009G053900 Sobic009G053900 Sobic003G316500--Sobic009G053900 Sobic009G074400 Sobic009G074400 Sobic003G316500--Sobic009G074400 Sobic003G316500--Sobic001G389100 Sobic003G316500--Sobic010G147100 Sobic003G316500--Sobic001G365900 Sobic009G165700 Sobic009G165700 Sobic003G316500--Sobic009G165700 Sobic003G316500--Sobic001G451400 Sobic010G206900 Sobic010G206900 Sobic003G316500--Sobic010G206900 Sobic003G309200 Sobic003G309200 Sobic010G223700--Sobic003G309200 Sobic010G223700--Sobic003G221900 Sobic010G223700--Sobic001G122832 Sobic010G025300 Sobic010G025300 Sobic010G223700--Sobic010G025300 Sobic001G425800 Sobic001G425800 Sobic010G223700--Sobic001G425800 Sobic010G223700--Sobic001G389100 Sobic004G117900 Sobic004G117900 Sobic010G223700--Sobic004G117900 Sobic010G223700--Sobic003G411900 Sobic003G131400 Sobic003G131400 Sobic010G223700--Sobic003G131400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G294800--Sobic002G211800 Sobic005G059800 Sobic005G059800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic010G032900 Sobic010G032900 Sobic002G294800--Sobic010G032900 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic002G211800--Sobic009G165700 Sobic007G031900 Sobic007G031900 Sobic002G211800--Sobic007G031900 Sobic002G344000 Sobic002G344000 Sobic002G211800--Sobic002G344000 Sobic003G166750 Sobic003G166750 Sobic002G211800--Sobic003G166750 Sobic004G023000 Sobic004G023000 Sobic002G211800--Sobic004G023000 Sobic002G211800--Sobic009G132700 Sobic003G170900 Sobic003G170900 Sobic002G211800--Sobic003G170900 Sobic002G211800--Sobic002G294800 Sobic003G362600 Sobic003G362600 Sobic002G211800--Sobic003G362600
Octagon: transcription factors


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