Gene annotation
Transcriptome id Sobic.001G126100.1
Synonym Sb01g011060
Functional annotation OsFBO16 - F-box and other domain containing protein, expressed
UniProt C5WNV0
Pfam PF01476 PF00646
Panther DB PTHR20932 PTHR20932:SF9
NCBI CDD KOG2850; Predicted peptidoglycan-binding protein, contains LysM domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G55000 : peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os03g49250.1 : OsFBO16 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007720 , Zm00025a007725
Brachypodium -
Barley -
Wheat TraesCS4B02G038000
Populus -


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cDNA sequences
Sobic.001G126100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G149200 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
2 Sobic.004G164400 expressed protein -
3 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.002G104100 FYVE zinc finger domain containing protein, expressed -
5 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
6 Sobic.001G297500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed -
7 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
8 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
9 Sobic.006G105400 expressed protein -
10 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
11 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.006G145200 expressed protein -
13 Sobic.004G205800 cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
14 Sobic.002G239300 OsFBX338 - F-box domain containing protein, expressed -
15 Sobic.002G006600 -(PubMedID : 26976818)@aminotransferase, classes I and II, domain containing protein, expressed K14272: glutamate--glyoxylate aminotransferase
16 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.002G252800 OsFBX332 - F-box domain containing protein, expressed -
18 Sobic.006G209400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
19 Sobic.007G159500 uncharacterized protein, YigZ family, putative, expressed -
20 Sobic.004G181600 calmodulin binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G126100 Sobic001G126100 Sobic010G149200 Sobic010G149200 Sobic001G126100--Sobic010G149200 Sobic004G164400 Sobic004G164400 Sobic001G126100--Sobic004G164400 Sobic003G221900 Sobic003G221900 Sobic001G126100--Sobic003G221900 Sobic002G104100 Sobic002G104100 Sobic001G126100--Sobic002G104100 Sobic001G169900 Sobic001G169900 Sobic001G126100--Sobic001G169900 Sobic001G297500 Sobic001G297500 Sobic001G126100--Sobic001G297500 Sobic010G243900 Sobic010G243900 Sobic001G126100--Sobic010G243900 Sobic004G042200 Sobic004G042200 Sobic001G126100--Sobic004G042200 Sobic006G105400 Sobic006G105400 Sobic001G126100--Sobic006G105400 Sobic006G145200 Sobic006G145200 Sobic010G149200--Sobic006G145200 Sobic010G149200--Sobic010G243900 Sobic010G021500 Sobic010G021500 Sobic010G149200--Sobic010G021500 Sobic010G149200--Sobic001G126100 Sobic010G149200--Sobic004G164400 Sobic003G340600 Sobic003G340600 Sobic010G149200--Sobic003G340600 Sobic010G149200--Sobic004G042200 Sobic010G143800 Sobic010G143800 Sobic010G149200--Sobic010G143800 Sobic010G149200--Sobic003G221900 Sobic006G228500 Sobic006G228500 Sobic004G164400--Sobic006G228500 Sobic007G108500 Sobic007G108500 Sobic004G164400--Sobic007G108500 Sobic004G174400 Sobic004G174400 Sobic004G164400--Sobic004G174400 Sobic002G006600 Sobic002G006600 Sobic004G164400--Sobic002G006600 Sobic004G164400--Sobic002G104100 Sobic004G164400--Sobic006G105400 Sobic001G318432 Sobic001G318432 Sobic004G164400--Sobic001G318432 Sobic006G274600 Sobic006G274600 Sobic004G164400--Sobic006G274600 Sobic004G164400--Sobic001G126100 Sobic001G122832 Sobic001G122832 Sobic003G221900--Sobic001G122832 Sobic003G316500 Sobic003G316500 Sobic003G221900--Sobic003G316500 Sobic003G221900--Sobic003G340600 Sobic001G389100 Sobic001G389100 Sobic003G221900--Sobic001G389100 Sobic003G221900--Sobic010G021500 Sobic006G133900 Sobic006G133900 Sobic003G221900--Sobic006G133900 Sobic010G147100 Sobic010G147100 Sobic003G221900--Sobic010G147100 Sobic001G332500 Sobic001G332500 Sobic003G221900--Sobic001G332500 Sobic003G029700 Sobic003G029700 Sobic003G221900--Sobic003G029700 Sobic004G181600 Sobic004G181600 Sobic002G104100--Sobic004G181600 Sobic002G104100--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic002G104100--Sobic006G065600 Sobic002G104100--Sobic004G164400 Sobic003G370700 Sobic003G370700 Sobic002G104100--Sobic003G370700 Sobic002G104100--Sobic001G169900 Sobic010G248700 Sobic010G248700 Sobic002G104100--Sobic010G248700 Sobic001G365900 Sobic001G365900 Sobic002G104100--Sobic001G365900 Sobic006G182900 Sobic006G182900 Sobic002G104100--Sobic006G182900 Sobic010G002700 Sobic010G002700 Sobic001G169900--Sobic010G002700 Sobic006G158100 Sobic006G158100 Sobic001G169900--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic001G169900--Sobic010G043800 Sobic007G136200 Sobic007G136200 Sobic001G169900--Sobic007G136200 Sobic001G198100 Sobic001G198100 Sobic001G169900--Sobic001G198100 Sobic006G142600 Sobic006G142600 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic003G017100 Sobic003G017100 Sobic001G169900--Sobic003G017100 Sobic004G117900 Sobic004G117900 Sobic001G297500--Sobic004G117900 Sobic001G297500--Sobic001G126100 Sobic010G240900 Sobic010G240900 Sobic001G297500--Sobic010G240900 Sobic007G207400 Sobic007G207400 Sobic001G297500--Sobic007G207400 Sobic006G048600 Sobic006G048600 Sobic001G297500--Sobic006G048600 Sobic010G004300 Sobic010G004300 Sobic001G297500--Sobic010G004300 Sobic003G313300 Sobic003G313300 Sobic001G297500--Sobic003G313300 Sobic001G067200 Sobic001G067200 Sobic001G297500--Sobic001G067200 Sobic008G188900 Sobic008G188900 Sobic001G297500--Sobic008G188900 Sobic001G046200 Sobic001G046200 Sobic010G243900--Sobic001G046200 Sobic010G243900--Sobic004G042200 Sobic010G243900--Sobic010G149200 Sobic001G161800 Sobic001G161800 Sobic010G243900--Sobic001G161800 Sobic003G398700 Sobic003G398700 Sobic010G243900--Sobic003G398700 Sobic008G113100 Sobic008G113100 Sobic010G243900--Sobic008G113100 Sobic010G243900--Sobic010G021500 Sobic002G029900 Sobic002G029900 Sobic010G243900--Sobic002G029900 Sobic002G042800 Sobic002G042800 Sobic010G243900--Sobic002G042800 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic001G214300 Sobic001G214300 Sobic006G105400--Sobic001G214300 Sobic006G105400--Sobic006G048600 Sobic006G048500 Sobic006G048500 Sobic006G105400--Sobic006G048500 Sobic006G105400--Sobic006G182900 Sobic004G007100 Sobic004G007100 Sobic006G105400--Sobic004G007100 Sobic007G161000 Sobic007G161000 Sobic006G105400--Sobic007G161000 Sobic006G105400--Sobic001G365900 Sobic010G255700 Sobic010G255700 Sobic006G105400--Sobic010G255700 Sobic004G341900 Sobic004G341900 Sobic006G105400--Sobic004G341900
Octagon: transcription factors


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