Gene annotation
Transcriptome id Sobic.002G239300.1
Synonym Sb02g027685
Functional annotation OsFBX338 - F-box domain containing protein, expressed
UniProt C5X3P9
Pfam PF08268 PF00646
Panther DB PTHR31790 PTHR31790:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17500 : F-box family protein
RAP-DB (Rice) LOC_Os09g34200.1 : OsFBX338 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a014162
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G178100 uncharacterized oxidoreductase yoxD, putative, expressed -
2 Sobic.001G198100 PAP fibrillin family domain containing protein, expressed -
3 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
4 Sobic.001G126100 OsFBO16 - F-box and other domain containing protein, expressed -
5 Sobic.007G150100 HD domain containing protein, putative, expressed -
6 Sobic.010G043800 uncharacterized protein ycf45, putative, expressed -
7 Sobic.004G179400 ferrochelatase 2(PubMedID : 26465154)@ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
8 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
9 Sobic.004G183000 - -
10 Sobic.003G340600 VHS and GAT domain containing protein, expressed -
11 Sobic.009G121000 expressed protein -
12 Sobic.001G098301 - -
13 Sobic.010G002700 expressed protein -
14 Sobic.006G173600 serine racemase, putative, expressed K12235: serine racemase
15 Sobic.001G530900 expressed protein -
16 Sobic.002G020400 PDV2, putative, expressed -
17 Sobic.003G247400 OsCttP1 - Putative C-terminal processing peptidase homologue, expressed -
18 Sobic.003G110800 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
19 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
20 Sobic.003G345500 ureidoglycolate hydrolase, putative, expressed -


Gene co-expression network
sample Sobic002G239300 Sobic002G239300 Sobic004G178100 Sobic004G178100 Sobic002G239300--Sobic004G178100 Sobic001G198100 Sobic001G198100 Sobic002G239300--Sobic001G198100 Sobic001G169900 Sobic001G169900 Sobic002G239300--Sobic001G169900 Sobic001G126100 Sobic001G126100 Sobic002G239300--Sobic001G126100 Sobic007G150100 Sobic007G150100 Sobic002G239300--Sobic007G150100 Sobic010G043800 Sobic010G043800 Sobic002G239300--Sobic010G043800 Sobic004G179400 Sobic004G179400 Sobic002G239300--Sobic004G179400 Sobic004G178500 Sobic004G178500 Sobic002G239300--Sobic004G178500 Sobic004G183000 Sobic004G183000 Sobic002G239300--Sobic004G183000 Sobic002G000600 Sobic002G000600 Sobic004G178100--Sobic002G000600 Sobic002G020400 Sobic002G020400 Sobic004G178100--Sobic002G020400 Sobic004G178100--Sobic010G043800 Sobic006G173600 Sobic006G173600 Sobic004G178100--Sobic006G173600 Sobic006G158100 Sobic006G158100 Sobic004G178100--Sobic006G158100 Sobic004G178100--Sobic001G198100 Sobic003G247400 Sobic003G247400 Sobic004G178100--Sobic003G247400 Sobic004G337400 Sobic004G337400 Sobic004G178100--Sobic004G337400 Sobic001G516901 Sobic001G516901 Sobic004G178100--Sobic001G516901 Sobic003G017100 Sobic003G017100 Sobic001G198100--Sobic003G017100 Sobic001G198100--Sobic003G247400 Sobic001G198100--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G198100--Sobic010G002700 Sobic002G006600 Sobic002G006600 Sobic001G198100--Sobic002G006600 Sobic001G198100--Sobic010G043800 Sobic009G121000 Sobic009G121000 Sobic001G198100--Sobic009G121000 Sobic003G276300 Sobic003G276300 Sobic001G198100--Sobic003G276300 Sobic006G142600 Sobic006G142600 Sobic001G198100--Sobic006G142600 Sobic001G169900--Sobic010G002700 Sobic001G169900--Sobic006G158100 Sobic001G169900--Sobic010G043800 Sobic007G136200 Sobic007G136200 Sobic001G169900--Sobic007G136200 Sobic001G169900--Sobic001G198100 Sobic001G169900--Sobic006G142600 Sobic001G394800 Sobic001G394800 Sobic001G169900--Sobic001G394800 Sobic001G017300 Sobic001G017300 Sobic001G169900--Sobic001G017300 Sobic001G169900--Sobic003G017100 Sobic010G149200 Sobic010G149200 Sobic001G126100--Sobic010G149200 Sobic004G164400 Sobic004G164400 Sobic001G126100--Sobic004G164400 Sobic003G221900 Sobic003G221900 Sobic001G126100--Sobic003G221900 Sobic002G104100 Sobic002G104100 Sobic001G126100--Sobic002G104100 Sobic001G126100--Sobic001G169900 Sobic001G297500 Sobic001G297500 Sobic001G126100--Sobic001G297500 Sobic010G243900 Sobic010G243900 Sobic001G126100--Sobic010G243900 Sobic004G042200 Sobic004G042200 Sobic001G126100--Sobic004G042200 Sobic006G105400 Sobic006G105400 Sobic001G126100--Sobic006G105400 Sobic001G003200 Sobic001G003200 Sobic007G150100--Sobic001G003200 Sobic007G150100--Sobic006G173600 Sobic001G048400 Sobic001G048400 Sobic007G150100--Sobic001G048400 Sobic001G504400 Sobic001G504400 Sobic007G150100--Sobic001G504400 Sobic007G150100--Sobic010G043800 Sobic009G056700 Sobic009G056700 Sobic007G150100--Sobic009G056700 Sobic007G150100--Sobic001G169900 Sobic003G398800 Sobic003G398800 Sobic007G150100--Sobic003G398800 Sobic003G110800 Sobic003G110800 Sobic007G150100--Sobic003G110800 Sobic010G043800--Sobic009G121000 Sobic010G043800--Sobic007G136200 Sobic010G043800--Sobic001G504400 Sobic010G043800--Sobic006G142600 Sobic010G043800--Sobic010G002700 Sobic010G043800--Sobic006G158100 Sobic007G103400 Sobic007G103400 Sobic010G043800--Sobic007G103400 Sobic010G043800--Sobic001G169900 Sobic001G378100 Sobic001G378100 Sobic010G043800--Sobic001G378100 Sobic001G540600 Sobic001G540600 Sobic004G179400--Sobic001G540600 Sobic001G060500 Sobic001G060500 Sobic004G179400--Sobic001G060500 Sobic009G207900 Sobic009G207900 Sobic004G179400--Sobic009G207900 Sobic002G028400 Sobic002G028400 Sobic004G179400--Sobic002G028400 Sobic008G074000 Sobic008G074000 Sobic004G179400--Sobic008G074000 Sobic003G125900 Sobic003G125900 Sobic004G179400--Sobic003G125900 Sobic004G179400--Sobic001G378100 Sobic009G170200 Sobic009G170200 Sobic004G179400--Sobic009G170200 Sobic004G179400--Sobic001G504400 Sobic001G298900 Sobic001G298900 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic001G365900 Sobic001G365900 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100 Sobic004G183000--Sobic001G198100 Sobic004G183000--Sobic010G002700 Sobic004G183000--Sobic010G043800 Sobic004G183000--Sobic001G169900 Sobic004G183000--Sobic004G042200 Sobic004G183000--Sobic001G378100 Sobic004G183000--Sobic001G298900 Sobic004G183000--Sobic006G158100 Sobic007G058001 Sobic007G058001 Sobic004G183000--Sobic007G058001
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.