Gene annotation
Transcriptome id Sobic.004G178500.1
Synonym auxin response factor, SbARF9, Sb04g022830, ARF1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
auxin response factor 7, putative, expressed
UniProt C5XUU5
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF28
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G59750 : auxin response factor 1
RAP-DB (Rice) LOC_Os02g35140.1 : auxin response factor 7, putative, expressed
MaizeGDB (Corn) Zm00025a020692 , Zm00025a031624
Brachypodium KQJ99896 , KQJ99895 , KQJ82781
Barley HORVU2Hr1G076920.10 , HORVU2Hr1G076920.8 , HORVU2Hr1G076920.9 , HORVU2Hr1G076920.6 , HORVU2Hr1G076920.7 , HORVU2Hr1G076920.4 , HORVU2Hr1G076920.5 , HORVU2Hr1G076920.2 , HORVU2Hr1G076920.3 , HORVU2Hr1G076920.1
Wheat TraesCS2A02G309300 , TraesCS2A02G309300 , TraesCS2B02G326400 , TraesCS2B02G326400 , TraesCS2D02G307600 , TraesCS2D02G307600 , TraesCS2D02G307600 , TraesCS2D02G307600
Populus -


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cDNA sequences
Sobic.004G178500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G298900 agenet domain containing protein, putative, expressed -
2 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
3 Sobic.004G181600 calmodulin binding protein, putative, expressed -
4 Sobic.008G044100 expressed protein -
5 Sobic.006G133900 NIN, putative, expressed -
6 Sobic.006G065600 expressed protein -
7 Sobic.006G270700 - -
8 Sobic.001G365900 PWWP domain containing protein, expressed -
9 Sobic.003G388100 expressed protein -
10 Sobic.001G081200 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
11 Sobic.006G182900 expressed protein -
12 Sobic.002G064750 - -
13 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
14 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.001G060500 YT521-B, putative, expressed -
16 Sobic.007G167100 expressed protein K19373: DnaJ homolog subfamily C member 28
17 Sobic.001G456900 expressed protein -
18 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
19 Sobic.010G143800 expressed protein -
20 Sobic.001G530900 expressed protein -


Gene co-expression network
sample Sobic004G178500 Sobic004G178500 Sobic001G298900 Sobic001G298900 Sobic004G178500--Sobic001G298900 Sobic002G198200 Sobic002G198200 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic006G133900 Sobic006G133900 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic006G270700 Sobic006G270700 Sobic004G178500--Sobic006G270700 Sobic001G365900 Sobic001G365900 Sobic004G178500--Sobic001G365900 Sobic003G388100 Sobic003G388100 Sobic004G178500--Sobic003G388100 Sobic001G230000 Sobic001G230000 Sobic001G298900--Sobic001G230000 Sobic006G219600 Sobic006G219600 Sobic001G298900--Sobic006G219600 Sobic001G298900--Sobic002G198200 Sobic001G298900--Sobic004G178500 Sobic003G155100 Sobic003G155100 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic001G298900--Sobic003G388100 Sobic005G142800 Sobic005G142800 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic002G198200--Sobic001G298900 Sobic007G111400 Sobic007G111400 Sobic002G198200--Sobic007G111400 Sobic002G198200--Sobic003G155100 Sobic002G198200--Sobic006G219600 Sobic002G198200--Sobic004G178500 Sobic002G198200--Sobic003G388100 Sobic006G065100 Sobic006G065100 Sobic002G198200--Sobic006G065100 Sobic002G345700 Sobic002G345700 Sobic002G198200--Sobic002G345700 Sobic002G198200--Sobic005G142800 Sobic004G181600--Sobic006G133900 Sobic004G181600--Sobic006G065600 Sobic002G104100 Sobic002G104100 Sobic004G181600--Sobic002G104100 Sobic005G075100 Sobic005G075100 Sobic004G181600--Sobic005G075100 Sobic007G167100 Sobic007G167100 Sobic004G181600--Sobic007G167100 Sobic008G130100 Sobic008G130100 Sobic004G181600--Sobic008G130100 Sobic004G181600--Sobic006G219600 Sobic004G181600--Sobic003G155100 Sobic004G181600--Sobic004G178500 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic004G134200 Sobic004G134200 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic006G133900--Sobic002G104100 Sobic006G133900--Sobic008G130100 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic006G065600--Sobic004G181600 Sobic006G065600--Sobic007G167100 Sobic006G065600--Sobic006G133900 Sobic006G065600--Sobic002G104100 Sobic006G065600--Sobic008G130100 Sobic006G065600--Sobic001G454500 Sobic007G193700 Sobic007G193700 Sobic006G065600--Sobic007G193700 Sobic006G065600--Sobic004G178500 Sobic006G065600--Sobic001G365900 Sobic006G270700--Sobic007G111400 Sobic006G270700--Sobic004G178500 Sobic006G270700--Sobic001G298900 Sobic003G127001 Sobic003G127001 Sobic006G270700--Sobic003G127001 Sobic006G270700--Sobic002G198200 Sobic006G270700--Sobic006G133900 Sobic006G270700--Sobic003G155100 Sobic006G270700--Sobic003G388100 Sobic006G270700--Sobic006G219600 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic002G008900 Sobic002G008900 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic003G388100--Sobic008G001200 Sobic003G388100--Sobic001G454500 Sobic003G388100--Sobic010G206900 Sobic003G388100--Sobic001G365900 Sobic010G123600 Sobic010G123600 Sobic003G388100--Sobic010G123600 Sobic003G388100--Sobic003G155100 Sobic009G256300 Sobic009G256300 Sobic003G388100--Sobic009G256300 Sobic003G388100--Sobic003G389200 Sobic003G388100--Sobic001G230000
Octagon: transcription factors


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