Gene annotation
Transcriptome id Sobic.006G270700.1
Synonym
Functional annotation -
UniProt A0A1B6PP64
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G270700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G111400 - -
2 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
3 Sobic.001G298900 agenet domain containing protein, putative, expressed -
4 Sobic.003G127001 - -
5 Sobic.002G198200 expressed protein K03128: transcription initiation factor TFIID subunit 2
6 Sobic.006G133900 NIN, putative, expressed -
7 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
8 Sobic.003G388100 expressed protein -
9 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
10 Sobic.002G173100 Leucine Rich Repeat family protein, expressed -
11 Sobic.004G334300 ATMAK10, putative, expressed -
12 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
13 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
14 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
15 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
16 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
17 Sobic.005G075100 rp3 protein, putative, expressed -
18 Sobic.003G220100 - -
19 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
20 Sobic.007G090403 - -


Gene co-expression network
sample Sobic006G270700 Sobic006G270700 Sobic007G111400 Sobic007G111400 Sobic006G270700--Sobic007G111400 Sobic004G178500 Sobic004G178500 Sobic006G270700--Sobic004G178500 Sobic001G298900 Sobic001G298900 Sobic006G270700--Sobic001G298900 Sobic003G127001 Sobic003G127001 Sobic006G270700--Sobic003G127001 Sobic002G198200 Sobic002G198200 Sobic006G270700--Sobic002G198200 Sobic006G133900 Sobic006G133900 Sobic006G270700--Sobic006G133900 Sobic003G155100 Sobic003G155100 Sobic006G270700--Sobic003G155100 Sobic003G388100 Sobic003G388100 Sobic006G270700--Sobic003G388100 Sobic006G219600 Sobic006G219600 Sobic006G270700--Sobic006G219600 Sobic007G111400--Sobic002G198200 Sobic007G111400--Sobic006G270700 Sobic005G142800 Sobic005G142800 Sobic007G111400--Sobic005G142800 Sobic007G111400--Sobic001G298900 Sobic007G111400--Sobic006G219600 Sobic002G345700 Sobic002G345700 Sobic007G111400--Sobic002G345700 Sobic007G111400--Sobic003G388100 Sobic004G146600 Sobic004G146600 Sobic007G111400--Sobic004G146600 Sobic005G075100 Sobic005G075100 Sobic007G111400--Sobic005G075100 Sobic004G178500--Sobic001G298900 Sobic004G178500--Sobic002G198200 Sobic004G181600 Sobic004G181600 Sobic004G178500--Sobic004G181600 Sobic008G044100 Sobic008G044100 Sobic004G178500--Sobic008G044100 Sobic004G178500--Sobic006G133900 Sobic006G065600 Sobic006G065600 Sobic004G178500--Sobic006G065600 Sobic004G178500--Sobic006G270700 Sobic001G365900 Sobic001G365900 Sobic004G178500--Sobic001G365900 Sobic004G178500--Sobic003G388100 Sobic001G230000 Sobic001G230000 Sobic001G298900--Sobic001G230000 Sobic001G298900--Sobic006G219600 Sobic001G298900--Sobic002G198200 Sobic001G298900--Sobic004G178500 Sobic001G298900--Sobic003G155100 Sobic001G298900--Sobic008G044100 Sobic001G298900--Sobic003G388100 Sobic001G298900--Sobic005G142800 Sobic001G298900--Sobic004G146600 Sobic003G127001--Sobic006G270700 Sobic003G127001--Sobic005G075100 Sobic002G115050 Sobic002G115050 Sobic003G127001--Sobic002G115050 Sobic007G202300 Sobic007G202300 Sobic003G127001--Sobic007G202300 Sobic003G190000 Sobic003G190000 Sobic003G127001--Sobic003G190000 Sobic010G077400 Sobic010G077400 Sobic003G127001--Sobic010G077400 Sobic002G173100 Sobic002G173100 Sobic003G127001--Sobic002G173100 Sobic002G244200 Sobic002G244200 Sobic003G127001--Sobic002G244200 Sobic005G110532 Sobic005G110532 Sobic003G127001--Sobic005G110532 Sobic002G198200--Sobic001G298900 Sobic002G198200--Sobic007G111400 Sobic002G198200--Sobic003G155100 Sobic002G198200--Sobic006G219600 Sobic002G198200--Sobic004G178500 Sobic002G198200--Sobic003G388100 Sobic006G065100 Sobic006G065100 Sobic002G198200--Sobic006G065100 Sobic002G198200--Sobic002G345700 Sobic002G198200--Sobic005G142800 Sobic006G133900--Sobic004G181600 Sobic001G454500 Sobic001G454500 Sobic006G133900--Sobic001G454500 Sobic006G133900--Sobic003G155100 Sobic006G133900--Sobic006G219600 Sobic003G370700 Sobic003G370700 Sobic006G133900--Sobic003G370700 Sobic002G104100 Sobic002G104100 Sobic006G133900--Sobic002G104100 Sobic008G130100 Sobic008G130100 Sobic006G133900--Sobic008G130100 Sobic006G133900--Sobic006G065600 Sobic003G191700 Sobic003G191700 Sobic006G133900--Sobic003G191700 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic003G388100--Sobic008G001200 Sobic003G388100--Sobic001G454500 Sobic003G388100--Sobic010G206900 Sobic003G388100--Sobic001G365900 Sobic010G123600 Sobic010G123600 Sobic003G388100--Sobic010G123600 Sobic003G388100--Sobic003G155100 Sobic009G256300 Sobic009G256300 Sobic003G388100--Sobic009G256300 Sobic003G389200 Sobic003G389200 Sobic003G388100--Sobic003G389200 Sobic003G388100--Sobic001G230000 Sobic006G219600--Sobic003G155100 Sobic009G201300 Sobic009G201300 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic006G219600--Sobic001G298900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500
Octagon: transcription factors


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