Gene annotation
Transcriptome id Sobic.005G142800.2,Sobic.005G142800.1,Sobic.005G142800.3
Synonym Sb05g020810
Functional annotation exportin 1, putative, expressed
UniProt A0A1Z5RIN2 , A0A1Z5RJ25 , A0A1B6PSH2
Pfam PF08389
Panther DB PTHR12363 PTHR12363:SF27
NCBI CDD KOG2081; Nuclear transport regulator
KEGG Orthology K15436; TRPO3, transportin-3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G12930 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os11g34120.1 : exportin 1, putative, expressed
MaizeGDB (Corn) Zm00025a033554
Brachypodium KQJ88304 , KQJ88303 , KQJ88302
Barley HORVU4Hr1G037680.2 , HORVU4Hr1G037680.3 , HORVU4Hr1G037680.1 , HORVU4Hr1G037680.6 , HORVU4Hr1G037680.7 , HORVU4Hr1G037680.4 , HORVU4Hr1G037680.5 , HORVU4Hr1G037680.8 , HORVU4Hr1G037680.9 , HORVU4Hr1G037680.10 , HORVU4Hr1G037680.12 , HORVU4Hr1G037680.14 , HORVU4Hr1G037680.15 , HORVU4Hr1G037680.16 , HORVU4Hr1G037680.19 , HORVU4Hr1G037680.25 , HORVU4Hr1G037680.24 , HORVU4Hr1G037680.26 , HORVU4Hr1G037680.21 , HORVU4Hr1G037680.20 , HORVU4Hr1G037680.22 , HORVU4Hr1G037680.17 , HORVU4Hr1G037680.18 , HORVU4Hr1G037680.13
Wheat TraesCS4B02G150500 , TraesCS4D02G163500 , TraesCS4D02G163500 , TraesCS4D02G163500 , TraesCS4D02G163500 , TraesCS4A02G144400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
2 Sobic.001G298900 agenet domain containing protein, putative, expressed -
3 Sobic.001G124100 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed K00889: 1-phosphatidylinositol-4-phosphate 5-kinase
4 Sobic.004G134200 GTP binding protein, putative, expressed -
5 Sobic.008G172300 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
6 Sobic.002G345700 insulin-degrading enzyme, putative, expressed K01408: IDE, insulysin
7 Sobic.002G418600 expressed protein K15710: E3 ubiquitin-protein ligase SHPRH
8 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
9 Sobic.007G111400 - -
10 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
11 Sobic.001G219700 pentatricopeptide, putative, expressed -
12 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
13 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
14 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
15 Sobic.006G233700 PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
16 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
17 Sobic.003G190000 PPR repeat domain containing protein, putative, expressed -
18 Sobic.002G316600 expressed protein -
19 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
20 Sobic.009G256300 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic005G142800 Sobic005G142800 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic002G418600 Sobic002G418600 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic006G119400--Sobic010G079500 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic006G119400--Sobic001G298900 Sobic001G230000 Sobic001G230000 Sobic001G298900--Sobic001G230000 Sobic006G219600 Sobic006G219600 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic003G155100 Sobic003G155100 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600 Sobic004G026500 Sobic004G026500 Sobic001G124100--Sobic004G026500 Sobic001G219700 Sobic001G219700 Sobic001G124100--Sobic001G219700 Sobic001G124100--Sobic005G142800 Sobic001G124100--Sobic008G172300 Sobic001G396000 Sobic001G396000 Sobic001G124100--Sobic001G396000 Sobic002G339300 Sobic002G339300 Sobic001G124100--Sobic002G339300 Sobic002G168500 Sobic002G168500 Sobic001G124100--Sobic002G168500 Sobic006G233700 Sobic006G233700 Sobic001G124100--Sobic006G233700 Sobic001G124100--Sobic006G219600 Sobic004G134200--Sobic008G044100 Sobic001G374100 Sobic001G374100 Sobic004G134200--Sobic001G374100 Sobic009G256300 Sobic009G256300 Sobic004G134200--Sobic009G256300 Sobic010G010700 Sobic010G010700 Sobic004G134200--Sobic010G010700 Sobic009G215500 Sobic009G215500 Sobic004G134200--Sobic009G215500 Sobic001G194200 Sobic001G194200 Sobic004G134200--Sobic001G194200 Sobic004G276400 Sobic004G276400 Sobic004G134200--Sobic004G276400 Sobic003G011300 Sobic003G011300 Sobic004G134200--Sobic003G011300 Sobic001G172700 Sobic001G172700 Sobic004G134200--Sobic001G172700 Sobic008G172300--Sobic004G026500 Sobic009G014100 Sobic009G014100 Sobic008G172300--Sobic009G014100 Sobic003G340600 Sobic003G340600 Sobic008G172300--Sobic003G340600 Sobic008G172300--Sobic002G345700 Sobic008G172300--Sobic001G124100 Sobic010G197000 Sobic010G197000 Sobic008G172300--Sobic010G197000 Sobic008G172300--Sobic005G142800 Sobic002G168300 Sobic002G168300 Sobic008G172300--Sobic002G168300 Sobic002G167500 Sobic002G167500 Sobic008G172300--Sobic002G167500 Sobic002G345700--Sobic008G172300 Sobic005G075100 Sobic005G075100 Sobic002G345700--Sobic005G075100 Sobic002G345700--Sobic005G142800 Sobic002G345700--Sobic001G396000 Sobic002G345700--Sobic002G198200 Sobic002G345700--Sobic004G026500 Sobic002G345700--Sobic001G124100 Sobic004G181600 Sobic004G181600 Sobic002G345700--Sobic004G181600 Sobic002G345700--Sobic007G111400 Sobic002G181000 Sobic002G181000 Sobic002G418600--Sobic002G181000 Sobic002G073200 Sobic002G073200 Sobic002G418600--Sobic002G073200 Sobic002G418600--Sobic006G233700 Sobic002G418600--Sobic005G142800 Sobic004G333400 Sobic004G333400 Sobic002G418600--Sobic004G333400 Sobic004G165000 Sobic004G165000 Sobic002G418600--Sobic004G165000 Sobic001G500600 Sobic001G500600 Sobic002G418600--Sobic001G500600 Sobic003G334100 Sobic003G334100 Sobic002G418600--Sobic003G334100 Sobic002G418600--Sobic009G014100 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic002G316600 Sobic002G316600 Sobic010G079500--Sobic002G316600 Sobic009G109200 Sobic009G109200 Sobic010G079500--Sobic009G109200 Sobic010G079500--Sobic001G230000 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic007G111400--Sobic002G198200 Sobic006G270700 Sobic006G270700 Sobic007G111400--Sobic006G270700 Sobic007G111400--Sobic005G142800 Sobic007G111400--Sobic001G298900 Sobic007G111400--Sobic006G219600 Sobic007G111400--Sobic002G345700 Sobic007G111400--Sobic003G388100 Sobic007G111400--Sobic004G146600 Sobic007G111400--Sobic005G075100
Octagon: transcription factors


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