Gene annotation
Transcriptome id Sobic.001G145000.1
Synonym PAPS1, Sb01g012650
Functional annotation expressed protein
UniProt C5WQD3
Pfam PF01909 PF04926 PF04928
Panther DB PTHR10682 PTHR10682:SF10
NCBI CDD -
KEGG Orthology K14376; poly(A) polymerase
Gene Ontology GO:0016779; nucleotidyltransferase activity GO:0003723RNA binding GO:0004652polynucleotide adenylyltransferase activity GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G17980 : poly(A) polymerase 1
RAP-DB (Rice) LOC_Os06g21470.1 : expressed protein
MaizeGDB (Corn) Zm00025a044062 , Zm00025a007528 , Zm00025a056065 , Zm00025a028610 , Zm00025a017173 , Zm00025a024589 , Zm00025a024578 , Zm00025a051025
Brachypodium PNT65881 , PNT65880 , KQJ93336
Barley HORVU4Hr1G011370.2 , HORVU4Hr1G011370.3 , HORVU4Hr1G011370.1 , HORVU4Hr1G011370.6 , HORVU4Hr1G011370.7 , HORVU4Hr1G011370.4 , HORVU4Hr1G011370.5 , HORVU4Hr1G011370.8 , HORVU4Hr1G011370.9 , HORVU4Hr1G011370.10 , HORVU4Hr1G011370.11 , HORVU4Hr1G011370.12 , HORVU4Hr1G011370.13 , HORVU4Hr1G011370.14 , HORVU4Hr1G011370.15 , HORVU4Hr1G011370.16
Wheat TraesCS4A02G246800 , TraesCS4B02G068100 , TraesCS4D02G067100
Populus -


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cDNA sequences
Sobic.001G145000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G424700 ATPOT1, putative, expressed -
2 Sobic.004G334300 ATMAK10, putative, expressed -
3 Sobic.002G275700 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
4 Sobic.004G244900 expressed protein -
5 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
6 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
7 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
8 Sobic.010G123600 WW domain containing protein, expressed -
9 Sobic.002G316600 expressed protein -
10 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
11 Sobic.003G168100 BZIP protein, putative, expressed -
12 Sobic.005G072100 preprotein translocase secA family protein, putative, expressed K03070: preprotein translocase subunit SecA
13 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
14 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
15 Sobic.004G185800 expressed protein -
16 Sobic.009G255700 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
17 Sobic.001G192000 autophagy protein 9, putative, expressed K17907: autophagy-related protein 9
18 Sobic.003G166750 - K15188: cyclin T
19 Sobic.004G026500 expressed protein -
20 Sobic.001G465700 aminotransferase, putative, expressed K00833: adenosylmethionine---8-amino-7-oxononanoate aminotransferase


Gene co-expression network
sample Sobic001G145000 Sobic001G145000 Sobic002G424700 Sobic002G424700 Sobic001G145000--Sobic002G424700 Sobic004G334300 Sobic004G334300 Sobic001G145000--Sobic004G334300 Sobic002G275700 Sobic002G275700 Sobic001G145000--Sobic002G275700 Sobic004G244900 Sobic004G244900 Sobic001G145000--Sobic004G244900 Sobic005G142800 Sobic005G142800 Sobic001G145000--Sobic005G142800 Sobic007G103100 Sobic007G103100 Sobic001G145000--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic001G145000--Sobic001G527800 Sobic010G123600 Sobic010G123600 Sobic001G145000--Sobic010G123600 Sobic002G316600 Sobic002G316600 Sobic001G145000--Sobic002G316600 Sobic002G424700--Sobic001G145000 Sobic002G424700--Sobic004G334300 Sobic002G424700--Sobic004G244900 Sobic001G519900 Sobic001G519900 Sobic002G424700--Sobic001G519900 Sobic002G424700--Sobic007G103100 Sobic007G185300 Sobic007G185300 Sobic002G424700--Sobic007G185300 Sobic002G424700--Sobic002G275700 Sobic005G072100 Sobic005G072100 Sobic002G424700--Sobic005G072100 Sobic007G090403 Sobic007G090403 Sobic002G424700--Sobic007G090403 Sobic003G186000 Sobic003G186000 Sobic004G334300--Sobic003G186000 Sobic008G001200 Sobic008G001200 Sobic004G334300--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic004G334300--Sobic001G457800 Sobic006G040500 Sobic006G040500 Sobic004G334300--Sobic006G040500 Sobic004G334300--Sobic010G123600 Sobic002G308700 Sobic002G308700 Sobic004G334300--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic004G334300--Sobic005G162500 Sobic004G334300--Sobic004G244900 Sobic004G276400 Sobic004G276400 Sobic004G334300--Sobic004G276400 Sobic001G192000 Sobic001G192000 Sobic002G275700--Sobic001G192000 Sobic001G194200 Sobic001G194200 Sobic002G275700--Sobic001G194200 Sobic002G275700--Sobic007G103100 Sobic006G041600 Sobic006G041600 Sobic002G275700--Sobic006G041600 Sobic009G255700 Sobic009G255700 Sobic002G275700--Sobic009G255700 Sobic003G195000 Sobic003G195000 Sobic002G275700--Sobic003G195000 Sobic001G289800 Sobic001G289800 Sobic002G275700--Sobic001G289800 Sobic002G275700--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic002G275700--Sobic003G196300 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic006G119400 Sobic006G119400 Sobic005G142800--Sobic006G119400 Sobic001G298900 Sobic001G298900 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic002G418600 Sobic002G418600 Sobic005G142800--Sobic002G418600 Sobic010G079500 Sobic010G079500 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic007G103100--Sobic002G316600 Sobic007G103100--Sobic003G186000 Sobic007G103100--Sobic001G194200 Sobic004G291900 Sobic004G291900 Sobic007G103100--Sobic004G291900 Sobic007G103100--Sobic004G276400 Sobic007G103100--Sobic001G527800 Sobic003G205200 Sobic003G205200 Sobic007G103100--Sobic003G205200 Sobic007G103100--Sobic002G275700 Sobic006G055200 Sobic006G055200 Sobic007G103100--Sobic006G055200 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic010G206900 Sobic010G206900 Sobic001G527800--Sobic010G206900 Sobic003G166750 Sobic003G166750 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic001G527800--Sobic010G123600 Sobic010G010700 Sobic010G010700 Sobic010G123600--Sobic010G010700 Sobic009G256300 Sobic009G256300 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic005G112300 Sobic005G112300 Sobic010G123600--Sobic005G112300 Sobic001G433800 Sobic001G433800 Sobic010G123600--Sobic001G433800 Sobic010G112100 Sobic010G112100 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic002G316600--Sobic001G289800 Sobic002G316600--Sobic010G079500
Octagon: transcription factors


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