Gene annotation
Transcriptome id Sobic.005G072100.2,Sobic.005G072100.1
Synonym Sb05g005960
Functional annotation preprotein translocase secA family protein, putative, expressed
UniProt A0A1B6PQR1 , A0A1Z5RHB9
Pfam PF01043 PF07516 PF07517
Panther DB PTHR30612 PTHR30612:SF5
NCBI CDD -
KEGG Orthology K03070; preprotein translocase subunit SecA
Gene Ontology GO:0017038; protein import GO:0016020membrane GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G21650 : Preprotein translocase SecA family protein
RAP-DB (Rice) LOC_Os11g08980.1 : preprotein translocase secA family protein, putative, expressed
MaizeGDB (Corn) Zm00025a012749
Brachypodium PNT64004 , PNT64005 , PNT64006 , KQJ89081 , KQJ89080 , KQJ89083 , KQJ89082
Barley HORVU4Hr1G043490.70 , HORVU4Hr1G043490.71 , HORVU4Hr1G043490.49 , HORVU4Hr1G043490.48 , HORVU4Hr1G043490.45 , HORVU4Hr1G043490.44 , HORVU4Hr1G043490.47 , HORVU4Hr1G043490.46 , HORVU4Hr1G043490.41 , HORVU4Hr1G043490.40 , HORVU4Hr1G043490.43 , HORVU4Hr1G043490.42 , HORVU4Hr1G043490.52 , HORVU4Hr1G043490.53 , HORVU4Hr1G043490.50 , HORVU4Hr1G043490.51 , HORVU4Hr1G043490.56 , HORVU4Hr1G043490.57 , HORVU4Hr1G043490.54 , HORVU4Hr1G043490.55 , HORVU4Hr1G043490.58 , HORVU4Hr1G043490.59 , HORVU4Hr1G043490.27 , HORVU4Hr1G043490.26 , HORVU4Hr1G043490.25 , HORVU4Hr1G043490.24 , HORVU4Hr1G043490.23 , HORVU4Hr1G043490.22 , HORVU4Hr1G043490.21 , HORVU4Hr1G043490.20 , HORVU4Hr1G043490.29 , HORVU4Hr1G043490.28 , HORVU4Hr1G043490.34 , HORVU4Hr1G043490.35 , HORVU4Hr1G043490.36 , HORVU4Hr1G043490.37 , HORVU4Hr1G043490.30 , HORVU4Hr1G043490.31 , HORVU4Hr1G043490.32 , HORVU4Hr1G043490.33 , HORVU4Hr1G043490.38 , HORVU4Hr1G043490.39 , HORVU4Hr1G043490.18 , HORVU4Hr1G043490.19 , HORVU4Hr1G043490.16 , HORVU4Hr1G043490.17 , HORVU4Hr1G043490.14 , HORVU4Hr1G043490.15 , HORVU4Hr1G043490.12 , HORVU4Hr1G043490.13 , HORVU4Hr1G043490.10 , HORVU4Hr1G043490.11 , HORVU4Hr1G043490.69 , HORVU4Hr1G043490.68 , HORVU4Hr1G043490.63 , HORVU4Hr1G043490.62 , HORVU4Hr1G043490.61 , HORVU4Hr1G043490.60 , HORVU4Hr1G043490.67 , HORVU4Hr1G043490.66 , HORVU4Hr1G043490.65 , HORVU4Hr1G043490.64 , HORVU4Hr1G043490.8 , HORVU4Hr1G043490.9 , HORVU4Hr1G043490.4 , HORVU4Hr1G043490.5 , HORVU4Hr1G043490.6 , HORVU4Hr1G043490.7 , HORVU4Hr1G043490.1 , HORVU4Hr1G043490.2 , HORVU4Hr1G043490.3
Wheat TraesCS4A02G216200 , TraesCS4B02G100000 , TraesCS4D02G096200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
2 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
3 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
4 Sobic.003G168100 BZIP protein, putative, expressed -
5 Sobic.002G127550 - -
6 Sobic.002G316600 expressed protein -
7 Sobic.001G145000 expressed protein K14376: poly(A) polymerase
8 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
9 Sobic.004G244900 expressed protein -
10 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
11 Sobic.002G424700 ATPOT1, putative, expressed -
12 Sobic.006G055200 RNA-binding motif protein, putative, expressed K13192: RNA-binding protein 26
13 Sobic.004G359100 expressed protein -
14 Sobic.006G088000 translocon Tic40, putative, expressed -
15 Sobic.002G411400 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
16 Sobic.002G029900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.006G216100 expressed protein -
18 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
19 Sobic.003G369400 expressed protein -
20 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3


Gene co-expression network
sample Sobic005G072100 Sobic005G072100 Sobic003G434700 Sobic003G434700 Sobic005G072100--Sobic003G434700 Sobic003G067100 Sobic003G067100 Sobic005G072100--Sobic003G067100 Sobic009G129100 Sobic009G129100 Sobic005G072100--Sobic009G129100 Sobic003G168100 Sobic003G168100 Sobic005G072100--Sobic003G168100 Sobic002G127550 Sobic002G127550 Sobic005G072100--Sobic002G127550 Sobic002G316600 Sobic002G316600 Sobic005G072100--Sobic002G316600 Sobic001G145000 Sobic001G145000 Sobic005G072100--Sobic001G145000 Sobic003G234900 Sobic003G234900 Sobic005G072100--Sobic003G234900 Sobic004G244900 Sobic004G244900 Sobic005G072100--Sobic004G244900 Sobic001G022500 Sobic001G022500 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G162800 Sobic003G162800 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic004G225600 Sobic004G225600 Sobic003G434700--Sobic004G225600 Sobic001G375000 Sobic001G375000 Sobic003G434700--Sobic001G375000 Sobic003G434700--Sobic003G234900 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic006G058100 Sobic006G058100 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic009G129100--Sobic003G168100 Sobic005G167700 Sobic005G167700 Sobic009G129100--Sobic005G167700 Sobic009G129100--Sobic003G067100 Sobic010G126000 Sobic010G126000 Sobic009G129100--Sobic010G126000 Sobic009G129100--Sobic003G234900 Sobic003G120300 Sobic003G120300 Sobic009G129100--Sobic003G120300 Sobic001G275300 Sobic001G275300 Sobic009G129100--Sobic001G275300 Sobic004G185800 Sobic004G185800 Sobic009G129100--Sobic004G185800 Sobic009G132700 Sobic009G132700 Sobic009G129100--Sobic009G132700 Sobic003G168100--Sobic010G126000 Sobic003G168100--Sobic005G167700 Sobic003G168100--Sobic009G129100 Sobic008G044100 Sobic008G044100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G398700 Sobic003G398700 Sobic003G168100--Sobic003G398700 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic003G168100--Sobic004G185800 Sobic003G138500 Sobic003G138500 Sobic002G127550--Sobic003G138500 Sobic002G127550--Sobic010G126000 Sobic002G127550--Sobic008G044100 Sobic004G034800 Sobic004G034800 Sobic002G127550--Sobic004G034800 Sobic001G194200 Sobic001G194200 Sobic002G127550--Sobic001G194200 Sobic008G001200 Sobic008G001200 Sobic002G127550--Sobic008G001200 Sobic010G010700 Sobic010G010700 Sobic002G127550--Sobic010G010700 Sobic004G291900 Sobic004G291900 Sobic002G127550--Sobic004G291900 Sobic004G209600 Sobic004G209600 Sobic002G127550--Sobic004G209600 Sobic007G103100 Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic001G527800 Sobic001G527800 Sobic002G316600--Sobic001G527800 Sobic003G186000 Sobic003G186000 Sobic002G316600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic002G424700 Sobic002G424700 Sobic001G145000--Sobic002G424700 Sobic004G334300 Sobic004G334300 Sobic001G145000--Sobic004G334300 Sobic002G275700 Sobic002G275700 Sobic001G145000--Sobic002G275700 Sobic001G145000--Sobic004G244900 Sobic005G142800 Sobic005G142800 Sobic001G145000--Sobic005G142800 Sobic001G145000--Sobic007G103100 Sobic001G145000--Sobic001G527800 Sobic010G123600 Sobic010G123600 Sobic001G145000--Sobic010G123600 Sobic001G145000--Sobic002G316600 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic003G234900--Sobic002G043600 Sobic003G141100 Sobic003G141100 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic006G038500 Sobic006G038500 Sobic003G234900--Sobic006G038500 Sobic001G457800 Sobic001G457800 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic003G155100 Sobic003G155100 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G356700 Sobic004G356700 Sobic004G244900--Sobic004G356700 Sobic009G201300 Sobic009G201300 Sobic004G244900--Sobic009G201300 Sobic004G244900--Sobic002G275700 Sobic004G244900--Sobic003G168100
Octagon: transcription factors


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