Gene annotation
Transcriptome id Sobic.006G088000.1
Synonym ATTIC40, TIC40, PDE120, Sb06g017360
Functional annotation translocon Tic40, putative, expressed
UniProt C5Y8T1
Pfam -
Panther DB PTHR22904 PTHR22904:SF373
NCBI CDD KOG1308; Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G16620 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os04g35900.1 : translocon Tic40, putative, expressed
MaizeGDB (Corn) Zm00025a011289 , Zm00025a056106
Brachypodium KQJ82749 , KQJ82751 , KQJ82750
Barley HORVU2Hr1G076790.5 , HORVU2Hr1G076790.4 , HORVU2Hr1G076790.7 , HORVU2Hr1G076790.6 , HORVU2Hr1G076790.1 , HORVU2Hr1G076790.3 , HORVU2Hr1G076790.2 , HORVU2Hr1G076790.9 , HORVU2Hr1G076790.8 , HORVU2Hr1G076790.11 , HORVU2Hr1G076790.10 , HORVU2Hr1G076790.13 , HORVU2Hr1G076790.12 , HORVU2Hr1G076790.15 , HORVU2Hr1G076790.14
Wheat TraesCS2A02G308600 , TraesCS2A02G308600 , TraesCS2A02G308600 , TraesCS2A02G308600 , TraesCS2A02G308600 , TraesCS2A02G308600 , TraesCS2D02G306800 , TraesCS2B02G325100 , TraesCS2B02G325100 , TraesCS2B02G325100
Populus -


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cDNA sequences
Sobic.006G088000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
4 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
5 Sobic.003G162800 expressed protein -
6 Sobic.003G045300 cobalt ion transporter, putative, expressed -
7 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
8 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
9 Sobic.008G090900 expressed protein -
10 Sobic.004G359100 expressed protein -
11 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
12 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
13 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
14 Sobic.001G433100 expressed protein -
15 Sobic.001G003900 pentatricopeptide, putative, expressed -
16 Sobic.003G345900 histone deacetylase, putative, expressed -
17 Sobic.004G214400 tic20, putative, expressed -
18 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
19 Sobic.006G021800 uncharacterized protein family UPF0016 domain containing protein, expressed -
20 Sobic.002G181132 - -


Gene co-expression network
sample Sobic006G088000 Sobic006G088000 Sobic001G375000 Sobic001G375000 Sobic006G088000--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic006G088000--Sobic003G128400 Sobic004G003900 Sobic004G003900 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic003G162800 Sobic003G162800 Sobic006G088000--Sobic003G162800 Sobic003G045300 Sobic003G045300 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic008G090900 Sobic008G090900 Sobic006G088000--Sobic008G090900 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G382800--Sobic001G003900 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic003G045300--Sobic001G003900 Sobic003G045300--Sobic002G181132 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic003G045300--Sobic005G184300 Sobic003G045300--Sobic003G162800 Sobic003G045300--Sobic008G090900 Sobic001G249400--Sobic006G088000 Sobic001G249400--Sobic001G375000 Sobic001G249400--Sobic003G162800 Sobic001G249400--Sobic002G156100 Sobic010G086900 Sobic010G086900 Sobic001G249400--Sobic010G086900 Sobic001G249400--Sobic003G128400 Sobic001G249400--Sobic010G255100 Sobic001G102500 Sobic001G102500 Sobic001G249400--Sobic001G102500 Sobic001G249400--Sobic001G382800 Sobic006G256600 Sobic006G256600 Sobic010G255100--Sobic006G256600 Sobic003G085000 Sobic003G085000 Sobic010G255100--Sobic003G085000 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic010G255100--Sobic003G128400 Sobic006G210400 Sobic006G210400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic010G255100--Sobic001G102500 Sobic008G090900--Sobic004G003900 Sobic008G090900--Sobic009G092900 Sobic008G090900--Sobic002G181132 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic008G090900--Sobic003G045300 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic008G090900--Sobic006G088000
Octagon: transcription factors


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