Gene annotation
Transcriptome id Sobic.001G249400.1,Sobic.001G249400.2
Synonym Sb01g022060
Functional annotation tetrapyrrole methylase family protein, putative, expressed
UniProt C5WM48 , A0A1Z5S798
Pfam PF00590
Panther DB PTHR21091 PTHR21091:SF18
NCBI CDD -
KEGG Orthology K07056; 16S rRNA (cytidine1402-2'-O)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G45110 : Tetrapyrrole (Corrin/Porphyrin) Methylases
RAP-DB (Rice) LOC_Os10g27450.1 : tetrapyrrole methylase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a006933
Brachypodium KQJ96687 , KQJ96686 , KQJ96690 , KQJ96689 , KQJ96688
Barley HORVU1Hr1G034570.4 , HORVU1Hr1G034570.5 , HORVU1Hr1G034570.6 , HORVU1Hr1G034570.7 , HORVU1Hr1G034570.1 , HORVU1Hr1G034570.2 , HORVU1Hr1G034570.3 , HORVU1Hr1G034570.8 , HORVU1Hr1G034570.9 , HORVU1Hr1G034570.22 , HORVU1Hr1G034570.21 , HORVU1Hr1G034570.20 , HORVU1Hr1G034570.16 , HORVU1Hr1G034570.17 , HORVU1Hr1G034570.14 , HORVU1Hr1G034570.15 , HORVU1Hr1G034570.12 , HORVU1Hr1G034570.13 , HORVU1Hr1G034570.10 , HORVU1Hr1G034570.11 , HORVU1Hr1G034570.18 , HORVU1Hr1G034570.19
Wheat TraesCS1B02G153700 , TraesCS1D02G134800 , TraesCS1A02G136800 , TraesCS1A02G136800 , TraesCS1A02G136800 , TraesCS1B02G153700
Populus PNT38292


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cDNA sequences
Sobic.001G249400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G088000 translocon Tic40, putative, expressed -
2 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
3 Sobic.003G162800 expressed protein -
4 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
5 Sobic.010G086900 OsFBX187 - F-box domain containing protein, expressed -
6 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
8 Sobic.001G102500 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, putative, expressed K03527: ispH, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase
9 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
10 Sobic.003G170200 OsClp2 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.006G186600 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
12 Sobic.004G359100 expressed protein -
13 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
14 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
15 Sobic.004G225600 - -
16 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
17 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
18 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
19 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
20 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -


Gene co-expression network
sample Sobic001G249400 Sobic001G249400 Sobic006G088000 Sobic006G088000 Sobic001G249400--Sobic006G088000 Sobic001G375000 Sobic001G375000 Sobic001G249400--Sobic001G375000 Sobic003G162800 Sobic003G162800 Sobic001G249400--Sobic003G162800 Sobic002G156100 Sobic002G156100 Sobic001G249400--Sobic002G156100 Sobic010G086900 Sobic010G086900 Sobic001G249400--Sobic010G086900 Sobic003G128400 Sobic003G128400 Sobic001G249400--Sobic003G128400 Sobic010G255100 Sobic010G255100 Sobic001G249400--Sobic010G255100 Sobic001G102500 Sobic001G102500 Sobic001G249400--Sobic001G102500 Sobic001G382800 Sobic001G382800 Sobic001G249400--Sobic001G382800 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic004G003900 Sobic004G003900 Sobic006G088000--Sobic004G003900 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic003G045300 Sobic003G045300 Sobic006G088000--Sobic003G045300 Sobic006G088000--Sobic001G249400 Sobic006G088000--Sobic010G255100 Sobic008G090900 Sobic008G090900 Sobic006G088000--Sobic008G090900 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic002G181132 Sobic002G181132 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic010G086900--Sobic001G249400 Sobic009G046800 Sobic009G046800 Sobic010G086900--Sobic009G046800 Sobic010G100800 Sobic010G100800 Sobic010G086900--Sobic010G100800 Sobic002G378000 Sobic002G378000 Sobic010G086900--Sobic002G378000 Sobic001G300100 Sobic001G300100 Sobic010G086900--Sobic001G300100 Sobic010G086900--Sobic004G003900 Sobic002G404200 Sobic002G404200 Sobic010G086900--Sobic002G404200 Sobic010G086900--Sobic008G067100 Sobic004G019500 Sobic004G019500 Sobic010G086900--Sobic004G019500 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic006G256600 Sobic006G256600 Sobic010G255100--Sobic006G256600 Sobic003G085000 Sobic003G085000 Sobic010G255100--Sobic003G085000 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic010G255100--Sobic005G014700 Sobic010G255100--Sobic003G128400 Sobic006G210400 Sobic006G210400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic010G255100--Sobic001G102500 Sobic003G067100 Sobic003G067100 Sobic001G102500--Sobic003G067100 Sobic001G102500--Sobic005G014700 Sobic001G102500--Sobic010G255100 Sobic006G186600 Sobic006G186600 Sobic001G102500--Sobic006G186600 Sobic003G170200 Sobic003G170200 Sobic001G102500--Sobic003G170200 Sobic002G168300 Sobic002G168300 Sobic001G102500--Sobic002G168300 Sobic003G434700 Sobic003G434700 Sobic001G102500--Sobic003G434700 Sobic001G102500--Sobic006G210400 Sobic004G238900 Sobic004G238900 Sobic001G102500--Sobic004G238900 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300
Octagon: transcription factors


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