Gene annotation
Transcriptome id Sobic.001G022500.1
Synonym Sb01g002140, OVA5, ATKRS-2
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt C5WTY1
Pfam PF01336 PF00152
Panther DB PTHR22594 PTHR22594:SF20
NCBI CDD -
KEGG Orthology K04567; KARS, lysyl-tRNA synthetase, class II
Gene Ontology GO:0003676; nucleic acid binding GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G13490 : Lysyl-tRNA synthetase, class II
RAP-DB (Rice) LOC_Os02g41470.3 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008943
Brachypodium KQK00401
Barley HORVU6Hr1G058310.1 , HORVU6Hr1G058310.3 , HORVU6Hr1G058310.2 , HORVU6Hr1G058310.4
Wheat TraesCS6B02G256400 , TraesCS6A02G225200 , TraesCS6D02G210000
Populus -


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cDNA sequences
Sobic.001G022500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
2 Sobic.004G225600 - -
3 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
4 Sobic.003G162800 expressed protein -
5 Sobic.001G003900 pentatricopeptide, putative, expressed -
6 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
7 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
8 Sobic.001G099000 expressed protein -
9 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
10 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
11 Sobic.004G019500 pentatricopeptide, putative, expressed -
12 Sobic.003G045300 cobalt ion transporter, putative, expressed -
13 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
15 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
16 Sobic.003G040000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
17 Sobic.002G181132 - -
18 Sobic.001G326300 PPR repeat domain containing protein, putative, expressed -
19 Sobic.007G015300 calreticulin family protein, expressed -
20 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit


Gene co-expression network
sample Sobic001G022500 Sobic001G022500 Sobic003G434700 Sobic003G434700 Sobic001G022500--Sobic003G434700 Sobic004G225600 Sobic004G225600 Sobic001G022500--Sobic004G225600 Sobic004G003900 Sobic004G003900 Sobic001G022500--Sobic004G003900 Sobic003G162800 Sobic003G162800 Sobic001G022500--Sobic003G162800 Sobic001G003900 Sobic001G003900 Sobic001G022500--Sobic001G003900 Sobic003G067100 Sobic003G067100 Sobic001G022500--Sobic003G067100 Sobic001G375000 Sobic001G375000 Sobic001G022500--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic001G022500--Sobic001G099000 Sobic003G327200 Sobic003G327200 Sobic001G022500--Sobic003G327200 Sobic003G434700--Sobic001G022500 Sobic003G434700--Sobic003G067100 Sobic005G072100 Sobic005G072100 Sobic003G434700--Sobic005G072100 Sobic002G042500 Sobic002G042500 Sobic003G434700--Sobic002G042500 Sobic003G434700--Sobic003G162800 Sobic001G102500 Sobic001G102500 Sobic003G434700--Sobic001G102500 Sobic003G434700--Sobic004G225600 Sobic003G434700--Sobic001G375000 Sobic003G234900 Sobic003G234900 Sobic003G434700--Sobic003G234900 Sobic004G225600--Sobic001G022500 Sobic004G208600 Sobic004G208600 Sobic004G225600--Sobic004G208600 Sobic004G225600--Sobic003G162800 Sobic004G225600--Sobic001G099000 Sobic007G095500 Sobic007G095500 Sobic004G225600--Sobic007G095500 Sobic006G058100 Sobic006G058100 Sobic004G225600--Sobic006G058100 Sobic004G225600--Sobic001G375000 Sobic004G225600--Sobic003G434700 Sobic005G184300 Sobic005G184300 Sobic004G225600--Sobic005G184300 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic003G162800--Sobic001G375000 Sobic003G162800--Sobic003G327200 Sobic002G156100 Sobic002G156100 Sobic003G162800--Sobic002G156100 Sobic003G345900 Sobic003G345900 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic010G027200 Sobic010G027200 Sobic003G162800--Sobic010G027200 Sobic001G003900--Sobic005G184300 Sobic001G003900--Sobic003G045300 Sobic001G003900--Sobic001G099000 Sobic001G003900--Sobic001G375000 Sobic001G382800 Sobic001G382800 Sobic001G003900--Sobic001G382800 Sobic001G003900--Sobic003G128400 Sobic007G015300 Sobic007G015300 Sobic001G003900--Sobic007G015300 Sobic001G003900--Sobic004G003900 Sobic001G003900--Sobic010G027200 Sobic005G014700 Sobic005G014700 Sobic003G067100--Sobic005G014700 Sobic003G067100--Sobic003G234900 Sobic003G067100--Sobic001G102500 Sobic004G238900 Sobic004G238900 Sobic003G067100--Sobic004G238900 Sobic003G067100--Sobic006G058100 Sobic003G067100--Sobic003G434700 Sobic002G043600 Sobic002G043600 Sobic003G067100--Sobic002G043600 Sobic009G129100 Sobic009G129100 Sobic003G067100--Sobic009G129100 Sobic004G163800 Sobic004G163800 Sobic003G067100--Sobic004G163800 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic003G327200--Sobic003G162800 Sobic003G327200--Sobic001G375000 Sobic003G327200--Sobic001G003900 Sobic004G263200 Sobic004G263200 Sobic003G327200--Sobic004G263200 Sobic003G327200--Sobic003G128400 Sobic003G327200--Sobic001G514100 Sobic007G116100 Sobic007G116100 Sobic003G327200--Sobic007G116100 Sobic003G327200--Sobic010G027200 Sobic003G327200--Sobic001G022500
Octagon: transcription factors


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