Gene annotation
Transcriptome id Sobic.002G181132.2,Sobic.002G181132.4,Sobic.002G181132.1,Sobic.002G181132.5,Sobic.002G181132.3
Synonym -
Functional annotation -
UniProt A0A1W0W4W2 , A0A1W0W4U7 , A0A1W0W4N7 , A0A1W0W4P6
Pfam PF13812 PF13041 PF13041
Panther DB PTHR24015 PTHR24015:SF606 PTHR24015:SF606 PTHR24015
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G50280 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g22870.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a027703
Brachypodium KQK16161 , KQK16160
Barley HORVU2Hr1G067790.16 , HORVU2Hr1G067790.15 , HORVU2Hr1G067790.14 , HORVU2Hr1G067790.12 , HORVU2Hr1G067790.11 , HORVU2Hr1G067790.10 , HORVU2Hr1G067790.19 , HORVU2Hr1G067790.18 , HORVU2Hr1G067790.9 , HORVU2Hr1G067790.8 , HORVU2Hr1G067790.7 , HORVU2Hr1G067790.6 , HORVU2Hr1G067790.5 , HORVU2Hr1G067790.4 , HORVU2Hr1G067790.3 , HORVU2Hr1G067790.2 , HORVU2Hr1G067790.1 , HORVU2Hr1G067790.17
Wheat TraesCS2A02G277000 , TraesCS2B02G294600 , TraesCS2D02G276100
Populus PNT10280


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G166500 expressed protein -
2 Sobic.003G045300 cobalt ion transporter, putative, expressed -
3 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
4 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
5 Sobic.003G162800 expressed protein -
6 Sobic.008G090900 expressed protein -
7 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
8 Sobic.003G345900 histone deacetylase, putative, expressed -
9 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
10 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
11 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
12 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
14 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.001G003900 pentatricopeptide, putative, expressed -
16 Sobic.004G255500 SET domain-containing protein, putative, expressed -
17 Sobic.007G015300 calreticulin family protein, expressed -
18 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
19 Sobic.006G088000 translocon Tic40, putative, expressed -
20 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic002G181132 Sobic002G181132 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic003G045300 Sobic003G045300 Sobic002G181132--Sobic003G045300 Sobic004G003900 Sobic004G003900 Sobic002G181132--Sobic004G003900 Sobic001G375000 Sobic001G375000 Sobic002G181132--Sobic001G375000 Sobic003G162800 Sobic003G162800 Sobic002G181132--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic002G181132--Sobic008G090900 Sobic009G092900 Sobic009G092900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100 Sobic006G166500--Sobic002G181132 Sobic006G166500--Sobic001G375000 Sobic006G166500--Sobic003G162800 Sobic006G166500--Sobic003G045300 Sobic001G489800 Sobic001G489800 Sobic006G166500--Sobic001G489800 Sobic006G166500--Sobic004G003900 Sobic006G166500--Sobic009G092900 Sobic001G514100 Sobic001G514100 Sobic006G166500--Sobic001G514100 Sobic006G237100 Sobic006G237100 Sobic006G166500--Sobic006G237100 Sobic003G128400 Sobic003G128400 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic001G003900 Sobic001G003900 Sobic003G045300--Sobic001G003900 Sobic003G045300--Sobic002G181132 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic005G184300 Sobic005G184300 Sobic003G045300--Sobic005G184300 Sobic003G045300--Sobic003G162800 Sobic003G045300--Sobic008G090900 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G162800--Sobic003G045300 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic008G090900--Sobic004G003900 Sobic008G090900--Sobic009G092900 Sobic008G090900--Sobic002G181132 Sobic001G382800 Sobic001G382800 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic008G090900--Sobic003G045300 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic008G090900--Sobic006G088000 Sobic009G092900--Sobic004G003900 Sobic009G092900--Sobic008G090900 Sobic009G092900--Sobic003G045300 Sobic009G092900--Sobic002G181132 Sobic005G117300 Sobic005G117300 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic009G092900--Sobic003G128400 Sobic009G092900--Sobic001G375000 Sobic001G346600 Sobic001G346600 Sobic009G092900--Sobic001G346600 Sobic003G345900--Sobic003G162800 Sobic003G345900--Sobic004G003900 Sobic003G345900--Sobic002G181132 Sobic003G345900--Sobic001G375000 Sobic003G345900--Sobic006G088000 Sobic003G345900--Sobic002G156100 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic010G255100 Sobic010G255100 Sobic002G156100--Sobic010G255100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.