Gene annotation
Transcriptome id Sobic.003G345900.1
Synonym Sb03g038950, ATHDA14, hda14
Functional annotation histone deacetylase, putative, expressed
UniProt C5XP11
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF104
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33470 : histone deacetylase 14
RAP-DB (Rice) LOC_Os12g08220.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a026984
Brachypodium -
Barley HORVU5Hr1G037920.9 , HORVU5Hr1G037920.6 , HORVU5Hr1G037920.7 , HORVU5Hr1G037920.4 , HORVU5Hr1G037920.5 , HORVU5Hr1G037920.2 , HORVU5Hr1G037920.3 , HORVU5Hr1G037920.1 , HORVU5Hr1G037920.10 , HORVU5Hr1G037920.11 , HORVU5Hr1G037920.8
Wheat TraesCS5B02G121300 , TraesCS5B02G121300 , TraesCS5B02G121300 , TraesCS5A02G119300 , TraesCS5A02G119300 , TraesCS5D02G126600 , TraesCS5D02G126600
Populus -


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cDNA sequences
Sobic.003G345900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G162800 expressed protein -
2 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
3 Sobic.002G181132 - -
4 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
5 Sobic.006G088000 translocon Tic40, putative, expressed -
6 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
7 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
9 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
10 Sobic.001G003900 pentatricopeptide, putative, expressed -
11 Sobic.001G433100 expressed protein -
12 Sobic.003G045300 cobalt ion transporter, putative, expressed -
13 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
14 Sobic.008G090900 expressed protein -
15 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
17 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
18 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
19 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
20 Sobic.004G214400 tic20, putative, expressed -


Gene co-expression network
sample Sobic003G345900 Sobic003G345900 Sobic003G162800 Sobic003G162800 Sobic003G345900--Sobic003G162800 Sobic004G003900 Sobic004G003900 Sobic003G345900--Sobic004G003900 Sobic002G181132 Sobic002G181132 Sobic003G345900--Sobic002G181132 Sobic001G375000 Sobic001G375000 Sobic003G345900--Sobic001G375000 Sobic006G088000 Sobic006G088000 Sobic003G345900--Sobic006G088000 Sobic002G156100 Sobic002G156100 Sobic003G345900--Sobic002G156100 Sobic010G027200 Sobic010G027200 Sobic003G345900--Sobic010G027200 Sobic006G217000 Sobic006G217000 Sobic003G345900--Sobic006G217000 Sobic004G263200 Sobic004G263200 Sobic003G345900--Sobic004G263200 Sobic003G162800--Sobic001G375000 Sobic003G327200 Sobic003G327200 Sobic003G162800--Sobic003G327200 Sobic003G162800--Sobic002G156100 Sobic003G162800--Sobic003G345900 Sobic003G162800--Sobic002G181132 Sobic003G162800--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic003G162800--Sobic003G045300 Sobic001G514100 Sobic001G514100 Sobic003G162800--Sobic001G514100 Sobic003G162800--Sobic010G027200 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic002G181132--Sobic003G045300 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic002G181132--Sobic008G090900 Sobic002G181132--Sobic009G092900 Sobic002G181132--Sobic003G345900 Sobic002G181132--Sobic002G156100 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic001G424300 Sobic001G424300 Sobic002G156100--Sobic001G424300 Sobic002G140000 Sobic002G140000 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic001G099000 Sobic001G099000 Sobic010G027200--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic001G401700 Sobic001G401700 Sobic006G217000--Sobic001G401700 Sobic006G217000--Sobic005G014700 Sobic001G120500 Sobic001G120500 Sobic006G217000--Sobic001G120500 Sobic001G166600 Sobic001G166600 Sobic006G217000--Sobic001G166600 Sobic006G217000--Sobic003G345900 Sobic006G217000--Sobic008G067100 Sobic003G369400 Sobic003G369400 Sobic006G217000--Sobic003G369400 Sobic006G217000--Sobic006G088000 Sobic002G343400 Sobic002G343400 Sobic006G217000--Sobic002G343400 Sobic004G263200--Sobic003G162800 Sobic004G263200--Sobic003G327200 Sobic004G263200--Sobic004G003900 Sobic004G214400 Sobic004G214400 Sobic004G263200--Sobic004G214400 Sobic007G101300 Sobic007G101300 Sobic004G263200--Sobic007G101300 Sobic005G197300 Sobic005G197300 Sobic004G263200--Sobic005G197300 Sobic004G263200--Sobic003G128400 Sobic004G263200--Sobic010G027200 Sobic004G263200--Sobic002G140000
Octagon: transcription factors


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