Gene annotation
Transcriptome id Sobic.004G214400.1
Synonym TIC20, Sb04g025970
Functional annotation tic20, putative, expressed
UniProt C5XXM8
Pfam PF16166
Panther DB PTHR33510 PTHR33510:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04940 : translocon at the inner envelope membrane of chloroplasts 20
RAP-DB (Rice) LOC_Os02g40080.1 : tic20, putative, expressed
MaizeGDB (Corn) Zm00025a021172
Brachypodium -
Barley HORVU6Hr1G057100.3 , HORVU6Hr1G057100.2 , HORVU6Hr1G057100.5 , HORVU6Hr1G057100.4 , HORVU6Hr1G057100.6 , HORVU6Hr1G057100.1
Wheat TraesCS6D02G205400 , TraesCS6A02G229400 , TraesCS6B02G252100
Populus -


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cDNA sequences
Sobic.004G214400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.004G263200 uncharacterized protein At1g26090, chloroplast precursor, putative, expressed K01551: arsA, ASNA1, arsenite/tail-anchored protein-transporting ATPase
3 Sobic.006G281066 - -
4 Sobic.007G101300 expressed protein -
5 Sobic.006G088000 translocon Tic40, putative, expressed -
6 Sobic.001G433100 expressed protein -
7 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
9 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
10 Sobic.010G221600 histidine triad family protein, putative, expressed K02503: HINT1, hinT, histidine triad (HIT) family protein
11 Sobic.001G543700 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
12 Sobic.003G162800 expressed protein -
13 Sobic.006G021800 uncharacterized protein family UPF0016 domain containing protein, expressed -
14 Sobic.001G445200 expressed protein -
15 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
16 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
17 Sobic.008G090900 expressed protein -
18 Sobic.002G181132 - -
19 Sobic.001G401700 aminotransferase, classes I and II, domain containing protein, expressed K10206: LL-diaminopimelate aminotransferase
20 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein


Gene co-expression network
sample Sobic004G214400 Sobic004G214400 Sobic001G375000 Sobic001G375000 Sobic004G214400--Sobic001G375000 Sobic004G263200 Sobic004G263200 Sobic004G214400--Sobic004G263200 Sobic006G281066 Sobic006G281066 Sobic004G214400--Sobic006G281066 Sobic007G101300 Sobic007G101300 Sobic004G214400--Sobic007G101300 Sobic006G088000 Sobic006G088000 Sobic004G214400--Sobic006G088000 Sobic001G433100 Sobic001G433100 Sobic004G214400--Sobic001G433100 Sobic010G027200 Sobic010G027200 Sobic004G214400--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic004G214400--Sobic006G237100 Sobic004G003900 Sobic004G003900 Sobic004G214400--Sobic004G003900 Sobic003G128400 Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic004G263200--Sobic003G162800 Sobic003G327200 Sobic003G327200 Sobic004G263200--Sobic003G327200 Sobic004G263200--Sobic004G003900 Sobic004G263200--Sobic004G214400 Sobic004G263200--Sobic007G101300 Sobic005G197300 Sobic005G197300 Sobic004G263200--Sobic005G197300 Sobic004G263200--Sobic003G128400 Sobic004G263200--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic004G263200--Sobic002G140000 Sobic006G281066--Sobic004G214400 Sobic001G104300 Sobic001G104300 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic002G363500 Sobic002G363500 Sobic006G281066--Sobic002G363500 Sobic001G395300 Sobic001G395300 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic006G281066--Sobic010G027200 Sobic006G281066--Sobic002G140000 Sobic001G321400 Sobic001G321400 Sobic006G281066--Sobic001G321400 Sobic005G184300 Sobic005G184300 Sobic007G101300--Sobic005G184300 Sobic005G110481 Sobic005G110481 Sobic007G101300--Sobic005G110481 Sobic007G101300--Sobic003G128400 Sobic002G013700 Sobic002G013700 Sobic007G101300--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic007G101300--Sobic009G104700 Sobic007G101300--Sobic001G375000 Sobic001G281500 Sobic001G281500 Sobic007G101300--Sobic001G281500 Sobic001G099000 Sobic001G099000 Sobic007G101300--Sobic001G099000 Sobic007G101300--Sobic010G027200 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic008G090900 Sobic008G090900 Sobic006G088000--Sobic008G090900 Sobic001G401700 Sobic001G401700 Sobic001G433100--Sobic001G401700 Sobic007G126900 Sobic007G126900 Sobic001G433100--Sobic007G126900 Sobic001G433100--Sobic008G090900 Sobic001G433100--Sobic006G088000 Sobic001G478600 Sobic001G478600 Sobic001G433100--Sobic001G478600 Sobic001G433100--Sobic004G214400 Sobic001G433100--Sobic004G003900 Sobic001G293300 Sobic001G293300 Sobic001G433100--Sobic001G293300 Sobic003G345900 Sobic003G345900 Sobic001G433100--Sobic003G345900 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900
Octagon: transcription factors


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