Gene annotation
Transcriptome id Sobic.006G021800.2,Sobic.006G021800.3,Sobic.006G021800.1
Synonym Sb06g002050
Functional annotation uncharacterized protein family UPF0016 domain containing protein, expressed
UniProt A0A1B6PJL3 , A0A1Z5RBQ6 , A0A1B6PJJ9
Pfam PF01169
Panther DB PTHR12608 PTHR12608:SF7
NCBI CDD KOG2881; Predicted membrane protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT4G13590 : Uncharacterized protein family (UPF0016)
RAP-DB (Rice) LOC_Os11g34180.1 : uncharacterized protein family UPF0016 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012379
Brachypodium KQJ81875 , KQK01619 , KQK01667
Barley HORVU2Hr1G009780.1 , HORVU2Hr1G009780.2 , HORVU2Hr1G009780.3
Wheat TraesCS2D02G072200 , TraesCS2A02G072800 , TraesCS2B02G087600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G021800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G088000 translocon Tic40, putative, expressed -
2 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
3 Sobic.008G090900 expressed protein -
4 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
5 Sobic.004G214400 tic20, putative, expressed -
6 Sobic.001G433100 expressed protein -
7 Sobic.004G018100 glutamyl-tRNA synthetase, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
8 Sobic.004G249600 mitochondrial carrier protein, putative, expressed K15111: solute carrier family 25 (mitochondrial S-adenosylmethionine transporter), member 26
9 Sobic.001G293300 chaperonin, putative, expressed K04078: groES, chaperonin GroES
10 Sobic.002G181132 - -
11 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
12 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
14 Sobic.001G003900 pentatricopeptide, putative, expressed -
15 Sobic.007G049800 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
16 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
17 Sobic.006G217000 imidazoleglycerol-phosphate dehydratase, putative, expressed K01693: imidazoleglycerol-phosphate dehydratase
18 Sobic.003G345900 histone deacetylase, putative, expressed -
19 Sobic.003G162800 expressed protein -
20 Sobic.002G378000 amidase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G021800 Sobic006G021800 Sobic006G088000 Sobic006G088000 Sobic006G021800--Sobic006G088000 Sobic001G382800 Sobic001G382800 Sobic006G021800--Sobic001G382800 Sobic008G090900 Sobic008G090900 Sobic006G021800--Sobic008G090900 Sobic001G375000 Sobic001G375000 Sobic006G021800--Sobic001G375000 Sobic004G214400 Sobic004G214400 Sobic006G021800--Sobic004G214400 Sobic001G433100 Sobic001G433100 Sobic006G021800--Sobic001G433100 Sobic004G018100 Sobic004G018100 Sobic006G021800--Sobic004G018100 Sobic004G249600 Sobic004G249600 Sobic006G021800--Sobic004G249600 Sobic001G293300 Sobic001G293300 Sobic006G021800--Sobic001G293300 Sobic006G088000--Sobic001G375000 Sobic003G128400 Sobic003G128400 Sobic006G088000--Sobic003G128400 Sobic004G003900 Sobic004G003900 Sobic006G088000--Sobic004G003900 Sobic006G088000--Sobic001G382800 Sobic003G162800 Sobic003G162800 Sobic006G088000--Sobic003G162800 Sobic003G045300 Sobic003G045300 Sobic006G088000--Sobic003G045300 Sobic001G249400 Sobic001G249400 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G003900 Sobic001G003900 Sobic001G382800--Sobic001G003900 Sobic002G156100 Sobic002G156100 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic008G090900--Sobic004G003900 Sobic009G092900 Sobic009G092900 Sobic008G090900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic008G090900--Sobic002G181132 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic008G090900--Sobic003G045300 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic008G090900--Sobic006G088000 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic004G214400--Sobic001G375000 Sobic004G263200 Sobic004G263200 Sobic004G214400--Sobic004G263200 Sobic006G281066 Sobic006G281066 Sobic004G214400--Sobic006G281066 Sobic007G101300 Sobic007G101300 Sobic004G214400--Sobic007G101300 Sobic004G214400--Sobic006G088000 Sobic004G214400--Sobic001G433100 Sobic004G214400--Sobic010G027200 Sobic004G214400--Sobic006G237100 Sobic004G214400--Sobic004G003900 Sobic001G401700 Sobic001G401700 Sobic001G433100--Sobic001G401700 Sobic007G126900 Sobic007G126900 Sobic001G433100--Sobic007G126900 Sobic001G433100--Sobic008G090900 Sobic001G433100--Sobic006G088000 Sobic001G478600 Sobic001G478600 Sobic001G433100--Sobic001G478600 Sobic001G433100--Sobic004G214400 Sobic001G433100--Sobic004G003900 Sobic001G433100--Sobic001G293300 Sobic003G345900 Sobic003G345900 Sobic001G433100--Sobic003G345900 Sobic004G018100--Sobic008G090900 Sobic003G040000 Sobic003G040000 Sobic004G018100--Sobic003G040000 Sobic004G018100--Sobic006G021800 Sobic006G058100 Sobic006G058100 Sobic004G018100--Sobic006G058100 Sobic004G018100--Sobic004G263200 Sobic004G018100--Sobic002G181132 Sobic007G095500 Sobic007G095500 Sobic004G018100--Sobic007G095500 Sobic004G018100--Sobic004G214400 Sobic004G018100--Sobic003G345900 Sobic004G249600--Sobic006G021800 Sobic004G249600--Sobic004G214400 Sobic004G249600--Sobic006G281066 Sobic003G236300 Sobic003G236300 Sobic004G249600--Sobic003G236300 Sobic004G249600--Sobic004G018100 Sobic004G202600 Sobic004G202600 Sobic004G249600--Sobic004G202600 Sobic004G249600--Sobic010G027200 Sobic001G426300 Sobic001G426300 Sobic004G249600--Sobic001G426300 Sobic001G215300 Sobic001G215300 Sobic004G249600--Sobic001G215300 Sobic001G293300--Sobic001G433100 Sobic001G293300--Sobic007G126900 Sobic001G293300--Sobic004G214400 Sobic001G293300--Sobic002G156100 Sobic003G298400 Sobic003G298400 Sobic001G293300--Sobic003G298400 Sobic001G293300--Sobic006G021800 Sobic001G445200 Sobic001G445200 Sobic001G293300--Sobic001G445200 Sobic001G293300--Sobic001G382800 Sobic001G293300--Sobic008G090900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.