Gene annotation
Transcriptome id Sobic.007G049800.1
Synonym Sb07g004020, PDE318
Functional annotation nucleolar GTP-binding protein 1, putative, expressed
UniProt C5YHC7
Pfam PF06858
Panther DB PTHR11702 PTHR11702:SF28
NCBI CDD -
KEGG Orthology K06943; nucleolar GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G80770 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g06230.1 : nucleolar GTP-binding protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a055122
Brachypodium KQJ95314
Barley HORVU6Hr1G010490.1 , HORVU6Hr1G010490.2
Wheat TraesCS6D02G055600 , TraesCS6A02G053900 , TraesCS6B02G072400 , TraesCS6B02G072400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G433100 expressed protein -
2 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
3 Sobic.001G003900 pentatricopeptide, putative, expressed -
4 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
5 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
6 Sobic.006G021800 uncharacterized protein family UPF0016 domain containing protein, expressed -
7 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.004G359100 expressed protein -
9 Sobic.006G088000 translocon Tic40, putative, expressed -
10 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
11 Sobic.003G434700 tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA, putative, expressed K03495: gidA, mnmG, tRNA uridine 5-carboxymethylaminomethyl modification enzyme
12 Sobic.005G014700 aminotransferase, putative, expressed K11717: cysteine desulfurase / selenocysteine lyase
13 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
14 Sobic.007G116100 thioredoxin, putative, expressed -
15 Sobic.002G043600 prolyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
16 Sobic.001G478600 uroporphyrinogen III synthase, putative, expressed K01719: hemD, uroporphyrinogen-III synthase
17 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
18 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
19 Sobic.010G051700 DNA topoisomerase I family protein, expressed -
20 Sobic.008G090900 expressed protein -


Gene co-expression network
sample Sobic007G049800 Sobic007G049800 Sobic001G433100 Sobic001G433100 Sobic007G049800--Sobic001G433100 Sobic009G214200 Sobic009G214200 Sobic007G049800--Sobic009G214200 Sobic001G003900 Sobic001G003900 Sobic007G049800--Sobic001G003900 Sobic004G238900 Sobic004G238900 Sobic007G049800--Sobic004G238900 Sobic001G375000 Sobic001G375000 Sobic007G049800--Sobic001G375000 Sobic006G021800 Sobic006G021800 Sobic007G049800--Sobic006G021800 Sobic010G027200 Sobic010G027200 Sobic007G049800--Sobic010G027200 Sobic004G359100 Sobic004G359100 Sobic007G049800--Sobic004G359100 Sobic006G088000 Sobic006G088000 Sobic007G049800--Sobic006G088000 Sobic001G401700 Sobic001G401700 Sobic001G433100--Sobic001G401700 Sobic007G126900 Sobic007G126900 Sobic001G433100--Sobic007G126900 Sobic008G090900 Sobic008G090900 Sobic001G433100--Sobic008G090900 Sobic001G433100--Sobic006G088000 Sobic001G478600 Sobic001G478600 Sobic001G433100--Sobic001G478600 Sobic004G214400 Sobic004G214400 Sobic001G433100--Sobic004G214400 Sobic004G003900 Sobic004G003900 Sobic001G433100--Sobic004G003900 Sobic001G293300 Sobic001G293300 Sobic001G433100--Sobic001G293300 Sobic003G345900 Sobic003G345900 Sobic001G433100--Sobic003G345900 Sobic009G214200--Sobic001G375000 Sobic004G019500 Sobic004G019500 Sobic009G214200--Sobic004G019500 Sobic001G448600 Sobic001G448600 Sobic009G214200--Sobic001G448600 Sobic009G214200--Sobic004G003900 Sobic002G140000 Sobic002G140000 Sobic009G214200--Sobic002G140000 Sobic009G103600 Sobic009G103600 Sobic009G214200--Sobic009G103600 Sobic009G214200--Sobic006G088000 Sobic003G128400 Sobic003G128400 Sobic009G214200--Sobic003G128400 Sobic001G249400 Sobic001G249400 Sobic009G214200--Sobic001G249400 Sobic005G184300 Sobic005G184300 Sobic001G003900--Sobic005G184300 Sobic003G045300 Sobic003G045300 Sobic001G003900--Sobic003G045300 Sobic001G099000 Sobic001G099000 Sobic001G003900--Sobic001G099000 Sobic001G003900--Sobic001G375000 Sobic001G382800 Sobic001G382800 Sobic001G003900--Sobic001G382800 Sobic001G003900--Sobic003G128400 Sobic007G015300 Sobic007G015300 Sobic001G003900--Sobic007G015300 Sobic001G003900--Sobic004G003900 Sobic001G003900--Sobic010G027200 Sobic003G067100 Sobic003G067100 Sobic004G238900--Sobic003G067100 Sobic005G014700 Sobic005G014700 Sobic004G238900--Sobic005G014700 Sobic004G238900--Sobic004G359100 Sobic001G102500 Sobic001G102500 Sobic004G238900--Sobic001G102500 Sobic002G343400 Sobic002G343400 Sobic004G238900--Sobic002G343400 Sobic003G369400 Sobic003G369400 Sobic004G238900--Sobic003G369400 Sobic007G023200 Sobic007G023200 Sobic004G238900--Sobic007G023200 Sobic010G255100 Sobic010G255100 Sobic004G238900--Sobic010G255100 Sobic004G163800 Sobic004G163800 Sobic004G238900--Sobic004G163800 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic006G021800--Sobic006G088000 Sobic006G021800--Sobic001G382800 Sobic006G021800--Sobic008G090900 Sobic006G021800--Sobic001G375000 Sobic006G021800--Sobic004G214400 Sobic006G021800--Sobic001G433100 Sobic004G018100 Sobic004G018100 Sobic006G021800--Sobic004G018100 Sobic004G249600 Sobic004G249600 Sobic006G021800--Sobic004G249600 Sobic006G021800--Sobic001G293300 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic004G359100--Sobic002G343400 Sobic002G431300 Sobic002G431300 Sobic004G359100--Sobic002G431300 Sobic005G082200 Sobic005G082200 Sobic004G359100--Sobic005G082200 Sobic004G359100--Sobic004G238900 Sobic004G359100--Sobic003G067100 Sobic004G359100--Sobic010G255100 Sobic003G083400 Sobic003G083400 Sobic004G359100--Sobic003G083400 Sobic004G359100--Sobic001G375000 Sobic004G359100--Sobic006G088000 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic006G088000--Sobic001G249400 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900
Octagon: transcription factors


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