Gene annotation
Transcriptome id Sobic.009G214200.1
Synonym Sb09g026980
Functional annotation phosphoribosylamine--glycine ligase, putative, expressed
UniProt C5YUU7
Pfam PF13535 PF02843 PF02844
Panther DB PTHR10520 PTHR10520:SF36
NCBI CDD -
KEGG Orthology K01945; phosphoribosylamine---glycine ligase
Gene Ontology GO:0009113; purine nucleobase biosynthetic process GO:0004637phosphoribosylamine-glycine ligase activity


Orthologs (automatic annotation)
TAIR AT1G09830 : Glycinamide ribonucleotide (GAR) synthetase
RAP-DB (Rice) LOC_Os08g09210.1 : phosphoribosylamine--glycine ligase, putative, expressed
MaizeGDB (Corn) Zm00025a044405 , Zm00025a036464
Brachypodium KQJ88867 , KQK04825 , KQK04824 , KQK04822 , KQK04821 , KQK04820 , KQK04819 , PNT63859
Barley HORVU4Hr1G080000.2 , HORVU4Hr1G080000.1
Wheat TraesCS4D02G311700 , TraesCS4D02G311700 , TraesCS4B02G314600 , TraesCS4A02G413900 , TraesCS7B02G441300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.004G019500 pentatricopeptide, putative, expressed -
3 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
4 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
5 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
6 Sobic.009G103600 MEE12, putative, expressed -
7 Sobic.006G088000 translocon Tic40, putative, expressed -
8 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.001G249400 tetrapyrrole methylase family protein, putative, expressed K07056: 16S rRNA (cytidine1402-2'-O)-methyltransferase
10 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
11 Sobic.004G225600 - -
12 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
13 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
15 Sobic.003G162800 expressed protein -
16 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
17 Sobic.008G067100 phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase, putative, expressed K14153: hydroxymethylpyrimidine kinase / phosphomethylpyrimidine kinase / thiamine-phosphate diphosphorylase
18 Sobic.004G238900 methyltransferase domain containing protein, putative, expressed -
19 Sobic.006G058100 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
20 Sobic.007G049800 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein


Gene co-expression network
sample Sobic009G214200 Sobic009G214200 Sobic001G375000 Sobic001G375000 Sobic009G214200--Sobic001G375000 Sobic004G019500 Sobic004G019500 Sobic009G214200--Sobic004G019500 Sobic001G448600 Sobic001G448600 Sobic009G214200--Sobic001G448600 Sobic004G003900 Sobic004G003900 Sobic009G214200--Sobic004G003900 Sobic002G140000 Sobic002G140000 Sobic009G214200--Sobic002G140000 Sobic009G103600 Sobic009G103600 Sobic009G214200--Sobic009G103600 Sobic006G088000 Sobic006G088000 Sobic009G214200--Sobic006G088000 Sobic003G128400 Sobic003G128400 Sobic009G214200--Sobic003G128400 Sobic001G249400 Sobic001G249400 Sobic009G214200--Sobic001G249400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic004G144400 Sobic004G144400 Sobic004G019500--Sobic004G144400 Sobic001G540800 Sobic001G540800 Sobic004G019500--Sobic001G540800 Sobic004G019500--Sobic009G214200 Sobic001G326300 Sobic001G326300 Sobic004G019500--Sobic001G326300 Sobic007G210000 Sobic007G210000 Sobic004G019500--Sobic007G210000 Sobic001G022500 Sobic001G022500 Sobic004G019500--Sobic001G022500 Sobic004G225600 Sobic004G225600 Sobic004G019500--Sobic004G225600 Sobic003G434700 Sobic003G434700 Sobic004G019500--Sobic003G434700 Sobic004G019500--Sobic004G003900 Sobic001G448600--Sobic001G375000 Sobic004G255500 Sobic004G255500 Sobic001G448600--Sobic004G255500 Sobic001G448600--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic001G448600--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic001G448600--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic001G448600--Sobic009G104700 Sobic007G015300 Sobic007G015300 Sobic001G448600--Sobic007G015300 Sobic001G448600--Sobic003G128400 Sobic001G448600--Sobic010G027200 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic009G092900 Sobic009G092900 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic009G103600--Sobic009G214200 Sobic003G109700 Sobic003G109700 Sobic009G103600--Sobic003G109700 Sobic006G032900 Sobic006G032900 Sobic009G103600--Sobic006G032900 Sobic002G336800 Sobic002G336800 Sobic009G103600--Sobic002G336800 Sobic005G110475 Sobic005G110475 Sobic009G103600--Sobic005G110475 Sobic003G144950 Sobic003G144950 Sobic009G103600--Sobic003G144950 Sobic009G103600--Sobic004G019500 Sobic003G324100 Sobic003G324100 Sobic009G103600--Sobic003G324100 Sobic009G215800 Sobic009G215800 Sobic009G103600--Sobic009G215800 Sobic006G088000--Sobic001G375000 Sobic006G088000--Sobic003G128400 Sobic006G088000--Sobic004G003900 Sobic001G382800 Sobic001G382800 Sobic006G088000--Sobic001G382800 Sobic006G088000--Sobic003G162800 Sobic006G088000--Sobic003G045300 Sobic006G088000--Sobic001G249400 Sobic010G255100 Sobic010G255100 Sobic006G088000--Sobic010G255100 Sobic006G088000--Sobic008G090900 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic001G249400--Sobic006G088000 Sobic001G249400--Sobic001G375000 Sobic001G249400--Sobic003G162800 Sobic001G249400--Sobic002G156100 Sobic010G086900 Sobic010G086900 Sobic001G249400--Sobic010G086900 Sobic001G249400--Sobic003G128400 Sobic001G249400--Sobic010G255100 Sobic001G102500 Sobic001G102500 Sobic001G249400--Sobic001G102500 Sobic001G249400--Sobic001G382800
Octagon: transcription factors


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