Gene annotation
Transcriptome id Sobic.001G448600.1
Synonym EMB2001, Sb01g042170
Functional annotation GTP-binding protein, putative, expressed
UniProt C5WRS7
Pfam PF01926
Panther DB PTHR11649 PTHR11649:SF49
NCBI CDD KOG2486; Predicted GTPase
KEGG Orthology K03978; GTP-binding protein
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G22870 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g13000.1 : GTP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a052986
Brachypodium KQK22764 , KQK22765
Barley HORVU4Hr1G066010.4 , HORVU4Hr1G066010.1 , HORVU4Hr1G066010.3 , HORVU4Hr1G066010.2
Wheat TraesCS4B02G236100 , TraesCS4A02G060700 , TraesCS4D02G237500
Populus PNT26294


JBrowse

Open New Page


cDNA sequences
Sobic.001G448600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
2 Sobic.004G255500 SET domain-containing protein, putative, expressed -
3 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
4 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.002G013700 PPR2, putative, expressed -
6 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
7 Sobic.007G015300 calreticulin family protein, expressed -
8 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
11 Sobic.009G214200 phosphoribosylamine--glycine ligase, putative, expressed K01945: phosphoribosylamine---glycine ligase
12 Sobic.002G181132 - -
13 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
14 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
15 Sobic.001G099000 expressed protein -
16 Sobic.005G110481 - -
17 Sobic.003G045300 cobalt ion transporter, putative, expressed -
18 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
19 Sobic.002G221600 expressed protein -
20 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I


Gene co-expression network
sample Sobic001G448600 Sobic001G448600 Sobic001G375000 Sobic001G375000 Sobic001G448600--Sobic001G375000 Sobic004G255500 Sobic004G255500 Sobic001G448600--Sobic004G255500 Sobic002G140000 Sobic002G140000 Sobic001G448600--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic001G448600--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic001G448600--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic001G448600--Sobic009G104700 Sobic007G015300 Sobic007G015300 Sobic001G448600--Sobic007G015300 Sobic003G128400 Sobic003G128400 Sobic001G448600--Sobic003G128400 Sobic010G027200 Sobic010G027200 Sobic001G448600--Sobic010G027200 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic001G099000 Sobic001G099000 Sobic004G255500--Sobic001G099000 Sobic004G255500--Sobic001G448600 Sobic005G022800 Sobic005G022800 Sobic004G255500--Sobic005G022800 Sobic004G255500--Sobic001G281500 Sobic004G255500--Sobic002G013700 Sobic004G255500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic004G255500--Sobic005G184300 Sobic004G255500--Sobic002G140000 Sobic004G255500--Sobic007G015300 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic001G281500--Sobic006G237100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic001G281500--Sobic006G263800 Sobic001G281500--Sobic010G027200 Sobic001G281500--Sobic005G184300 Sobic005G110481 Sobic005G110481 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic002G013700--Sobic010G011200 Sobic007G101300 Sobic007G101300 Sobic002G013700--Sobic007G101300 Sobic002G251400 Sobic002G251400 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G158800 Sobic002G158800 Sobic002G013700--Sobic002G158800 Sobic001G148200 Sobic001G148200 Sobic002G013700--Sobic001G148200 Sobic009G042200 Sobic009G042200 Sobic002G013700--Sobic009G042200 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic009G104700--Sobic003G128400 Sobic003G373300 Sobic003G373300 Sobic009G104700--Sobic003G373300 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.