Gene annotation
Transcriptome id Sobic.001G424300.2,Sobic.001G424300.1
Synonym Sb01g039880
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
UniProt C5WQ28 , A0A1Z5SAC9
Pfam PF13561
Panther DB PTHR24322 PTHR24322:SF335
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K08081; tropinone reductase I
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06060 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os03g16220.1 : oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001792
Brachypodium KQK22382
Barley HORVU4Hr1G060350.2 , HORVU4Hr1G060350.3 , HORVU4Hr1G060350.4 , HORVU4Hr1G060330.2 , HORVU4Hr1G060330.3 , HORVU4Hr1G060330.1 , HORVU4Hr1G060330.5 , HORVU4Hr1G060330.8
Wheat TraesCS4D02G210700 , TraesCS4D02G210800 , TraesCS4A02G094500 , TraesCS4B02G210000 , TraesCS4A02G094400 , TraesCS4B02G209900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
2 Sobic.001G489800 HNH endonuclease domain-containing protein, putative, expressed -
3 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
5 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
6 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
7 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
8 Sobic.002G156100 phosphoglycerate mutase, putative, expressed -
9 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
10 Sobic.001G291900 expressed protein -
11 Sobic.006G256600 expressed protein -
12 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
13 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
14 Sobic.001G447700 expressed protein -
15 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
16 Sobic.003G265500 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
17 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
18 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.004G301200 kinesin motor domain containing protein, expressed K11498: centromeric protein E
20 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase


Gene co-expression network
sample Sobic001G424300 Sobic001G424300 Sobic003G310100 Sobic003G310100 Sobic001G424300--Sobic003G310100 Sobic001G489800 Sobic001G489800 Sobic001G424300--Sobic001G489800 Sobic003G128400 Sobic003G128400 Sobic001G424300--Sobic003G128400 Sobic009G131600 Sobic009G131600 Sobic001G424300--Sobic009G131600 Sobic001G281500 Sobic001G281500 Sobic001G424300--Sobic001G281500 Sobic005G002900 Sobic005G002900 Sobic001G424300--Sobic005G002900 Sobic006G055800 Sobic006G055800 Sobic001G424300--Sobic006G055800 Sobic002G156100 Sobic002G156100 Sobic001G424300--Sobic002G156100 Sobic001G437200 Sobic001G437200 Sobic001G424300--Sobic001G437200 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic001G489800--Sobic001G424300 Sobic001G489800--Sobic003G310100 Sobic003G254600 Sobic003G254600 Sobic001G489800--Sobic003G254600 Sobic001G489800--Sobic001G281500 Sobic006G273400 Sobic006G273400 Sobic001G489800--Sobic006G273400 Sobic002G081500 Sobic002G081500 Sobic001G489800--Sobic002G081500 Sobic001G489800--Sobic001G196200 Sobic002G297400 Sobic002G297400 Sobic001G489800--Sobic002G297400 Sobic001G489800--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G045300 Sobic003G045300 Sobic003G128400--Sobic003G045300 Sobic005G184300 Sobic005G184300 Sobic003G128400--Sobic005G184300 Sobic004G003900 Sobic004G003900 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic009G131600--Sobic006G055800 Sobic007G171800 Sobic007G171800 Sobic009G131600--Sobic007G171800 Sobic010G035200 Sobic010G035200 Sobic009G131600--Sobic010G035200 Sobic003G324700 Sobic003G324700 Sobic009G131600--Sobic003G324700 Sobic002G131700 Sobic002G131700 Sobic009G131600--Sobic002G131700 Sobic009G131600--Sobic003G128400 Sobic007G090400 Sobic007G090400 Sobic009G131600--Sobic007G090400 Sobic009G131600--Sobic005G002900 Sobic009G131600--Sobic002G056800 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic010G027200 Sobic010G027200 Sobic001G281500--Sobic010G027200 Sobic001G281500--Sobic005G184300 Sobic001G083100 Sobic001G083100 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic009G148500 Sobic009G148500 Sobic005G002900--Sobic009G148500 Sobic001G469933 Sobic001G469933 Sobic005G002900--Sobic001G469933 Sobic001G291900 Sobic001G291900 Sobic005G002900--Sobic001G291900 Sobic006G106400 Sobic006G106400 Sobic005G002900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic005G002900--Sobic002G131700 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic001G368500 Sobic001G368500 Sobic006G055800--Sobic001G368500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic003G162800 Sobic003G162800 Sobic002G156100--Sobic003G162800 Sobic002G156100--Sobic001G375000 Sobic002G156100--Sobic003G128400 Sobic001G382800 Sobic001G382800 Sobic002G156100--Sobic001G382800 Sobic002G156100--Sobic003G045300 Sobic002G156100--Sobic010G255100 Sobic008G067100 Sobic008G067100 Sobic002G156100--Sobic008G067100 Sobic005G014700 Sobic005G014700 Sobic002G156100--Sobic005G014700 Sobic002G156100--Sobic001G424300 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic001G437200--Sobic009G131600 Sobic001G437200--Sobic001G424300 Sobic001G445200 Sobic001G445200 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400
Octagon: transcription factors


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