Gene annotation
Transcriptome id Sobic.003G085000.1
Synonym ATNAP6, NAP6, Sb03g007140
Functional annotation sufB/sufD domain containing protein, putative, expressed
UniProt C5XQU8
Pfam PF01458
Panther DB PTHR30508 PTHR30508:SF3
NCBI CDD -
KEGG Orthology K09015; Fe-S cluster assembly protein SufD
Gene Ontology GO:0016226; iron-sulfur cluster assembly


Orthologs (automatic annotation)
TAIR AT1G32500 : non-intrinsic ABC protein 6
RAP-DB (Rice) LOC_Os01g03650.1 : sufB/sufD domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023609 , Zm00025a035561
Brachypodium PNT69871 , KQK02506 , PNT69872
Barley HORVU3Hr1G004330.3 , HORVU3Hr1G004330.2 , HORVU3Hr1G004330.1
Wheat TraesCS3A02G047200 , TraesCS3D02G032700 , TraesCS3B02G035600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G085000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G256600 expressed protein -
2 Sobic.001G291900 expressed protein -
3 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
4 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
5 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
6 Sobic.001G531400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
7 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
8 Sobic.001G104800 expressed protein -
9 Sobic.004G065300 CR084 protein, putative, expressed -
10 Sobic.001G447700 expressed protein -
11 Sobic.001G309300 expressed protein -
12 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
13 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
14 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
15 Sobic.003G162900 expressed protein -
16 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor
17 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
18 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
19 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.007G090400 expressed protein -


Gene co-expression network
sample Sobic003G085000 Sobic003G085000 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic001G291900 Sobic001G291900 Sobic003G085000--Sobic001G291900 Sobic006G055800 Sobic006G055800 Sobic003G085000--Sobic006G055800 Sobic010G255100 Sobic010G255100 Sobic003G085000--Sobic010G255100 Sobic004G336000 Sobic004G336000 Sobic003G085000--Sobic004G336000 Sobic001G531400 Sobic001G531400 Sobic003G085000--Sobic001G531400 Sobic005G002900 Sobic005G002900 Sobic003G085000--Sobic005G002900 Sobic001G104800 Sobic001G104800 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic006G256600--Sobic010G255100 Sobic006G256600--Sobic003G085000 Sobic006G256600--Sobic001G291900 Sobic006G210400 Sobic006G210400 Sobic006G256600--Sobic006G210400 Sobic002G297400 Sobic002G297400 Sobic006G256600--Sobic002G297400 Sobic006G256600--Sobic006G055800 Sobic006G256600--Sobic005G002900 Sobic001G309300 Sobic001G309300 Sobic006G256600--Sobic001G309300 Sobic006G256600--Sobic004G065300 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic001G291900--Sobic004G336000 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic006G106400 Sobic006G106400 Sobic001G291900--Sobic006G106400 Sobic003G432500 Sobic003G432500 Sobic006G055800--Sobic003G432500 Sobic003G324700 Sobic003G324700 Sobic006G055800--Sobic003G324700 Sobic006G055800--Sobic005G002900 Sobic001G469933 Sobic001G469933 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic009G148500 Sobic009G148500 Sobic006G055800--Sobic009G148500 Sobic002G152800 Sobic002G152800 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400 Sobic010G255100--Sobic006G256600 Sobic010G255100--Sobic003G085000 Sobic001G382800 Sobic001G382800 Sobic010G255100--Sobic001G382800 Sobic010G255100--Sobic006G055800 Sobic005G014700 Sobic005G014700 Sobic010G255100--Sobic005G014700 Sobic003G128400 Sobic003G128400 Sobic010G255100--Sobic003G128400 Sobic010G255100--Sobic006G210400 Sobic001G308200 Sobic001G308200 Sobic010G255100--Sobic001G308200 Sobic001G102500 Sobic001G102500 Sobic010G255100--Sobic001G102500 Sobic004G336000--Sobic001G309300 Sobic001G495200 Sobic001G495200 Sobic004G336000--Sobic001G495200 Sobic008G073100 Sobic008G073100 Sobic004G336000--Sobic008G073100 Sobic004G336000--Sobic001G291900 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G011300 Sobic004G011300 Sobic004G336000--Sobic004G011300 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic001G531400--Sobic001G291900 Sobic001G531400--Sobic003G085000 Sobic007G208300 Sobic007G208300 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic001G531400--Sobic004G336000 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G531400--Sobic001G104800 Sobic001G531400--Sobic006G055800 Sobic005G002900--Sobic001G083100 Sobic005G002900--Sobic006G055800 Sobic005G002900--Sobic009G148500 Sobic005G002900--Sobic001G469933 Sobic005G002900--Sobic001G291900 Sobic005G002900--Sobic006G106400 Sobic005G002900--Sobic003G432500 Sobic003G232700 Sobic003G232700 Sobic005G002900--Sobic003G232700 Sobic002G131700 Sobic002G131700 Sobic005G002900--Sobic002G131700 Sobic001G104800--Sobic001G291900 Sobic009G030900 Sobic009G030900 Sobic001G104800--Sobic009G030900 Sobic001G104800--Sobic001G368500 Sobic001G104800--Sobic001G469933 Sobic001G104800--Sobic001G122400 Sobic001G104800--Sobic003G324700 Sobic004G335800 Sobic004G335800 Sobic001G104800--Sobic004G335800 Sobic001G104800--Sobic007G090400 Sobic001G104800--Sobic002G152800 Sobic004G065300--Sobic001G368500 Sobic004G065300--Sobic006G055800 Sobic004G065300--Sobic003G432500 Sobic004G065300--Sobic005G110400 Sobic004G065300--Sobic003G324700 Sobic004G065300--Sobic006G256600 Sobic004G065300--Sobic005G002900 Sobic004G065300--Sobic001G469933 Sobic004G065300--Sobic002G297400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.