Gene annotation
Transcriptome id Sobic.001G531400.1
Synonym Sb01g049430
Functional annotation riboflavin biosynthesis protein ribD, putative, expressed
UniProt C5X102
Pfam PF00383
Panther DB PTHR11079 PTHR11079:SF10
NCBI CDD KOG1018; Cytosine deaminase FCY1 and related enzymes
KEGG Orthology K11752; diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G20960 : Cytidine/deoxycytidylate deaminase family protein
RAP-DB (Rice) LOC_Os03g02600.1 : riboflavin biosynthesis protein ribD, putative, expressed
MaizeGDB (Corn) Zm00025a000242
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291900 expressed protein -
2 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
3 Sobic.007G208300 peptidase, putative, expressed K14677: aminoacylase
4 Sobic.007G090400 expressed protein -
5 Sobic.004G336000 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
6 Sobic.006G106400 OsDegp5 - Putative Deg protease homologue, expressed -
7 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
8 Sobic.001G104800 expressed protein -
9 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
10 Sobic.004G055500 inositol-1-monophosphatase, putative, expressed K01092: E3.1.3.25, IMPA, myo-inositol-1(or 4)-monophosphatase
11 Sobic.006G256600 expressed protein -
12 Sobic.005G002900 OsGrx_S16 - glutaredoxin subgroup II, expressed -
13 Sobic.002G424100 parvulin-type peptidyl prolyl cis/trans isomerase, putative, expressed -
14 Sobic.003G324700 expressed protein -
15 Sobic.001G309300 expressed protein -
16 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
17 Sobic.004G011300 S1 RNA binding domain containing protein, expressed -
18 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
19 Sobic.003G271900 expressed protein -
20 Sobic.003G432500 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@signal recognition particle receptor, putative, expressed K03110: fused signal recognition particle receptor


Gene co-expression network
sample Sobic001G531400 Sobic001G531400 Sobic001G291900 Sobic001G291900 Sobic001G531400--Sobic001G291900 Sobic003G085000 Sobic003G085000 Sobic001G531400--Sobic003G085000 Sobic007G208300 Sobic007G208300 Sobic001G531400--Sobic007G208300 Sobic007G090400 Sobic007G090400 Sobic001G531400--Sobic007G090400 Sobic004G336000 Sobic004G336000 Sobic001G531400--Sobic004G336000 Sobic006G106400 Sobic006G106400 Sobic001G531400--Sobic006G106400 Sobic001G122400 Sobic001G122400 Sobic001G531400--Sobic001G122400 Sobic001G104800 Sobic001G104800 Sobic001G531400--Sobic001G104800 Sobic006G055800 Sobic006G055800 Sobic001G531400--Sobic006G055800 Sobic001G368500 Sobic001G368500 Sobic001G291900--Sobic001G368500 Sobic001G291900--Sobic001G104800 Sobic001G291900--Sobic003G085000 Sobic001G291900--Sobic004G336000 Sobic005G002900 Sobic005G002900 Sobic001G291900--Sobic005G002900 Sobic009G059300 Sobic009G059300 Sobic001G291900--Sobic009G059300 Sobic001G309300 Sobic001G309300 Sobic001G291900--Sobic001G309300 Sobic001G291900--Sobic006G055800 Sobic001G291900--Sobic006G106400 Sobic006G256600 Sobic006G256600 Sobic003G085000--Sobic006G256600 Sobic003G085000--Sobic001G291900 Sobic003G085000--Sobic006G055800 Sobic010G255100 Sobic010G255100 Sobic003G085000--Sobic010G255100 Sobic003G085000--Sobic004G336000 Sobic003G085000--Sobic001G531400 Sobic003G085000--Sobic005G002900 Sobic003G085000--Sobic001G104800 Sobic004G065300 Sobic004G065300 Sobic003G085000--Sobic004G065300 Sobic007G208300--Sobic001G531400 Sobic007G208300--Sobic001G291900 Sobic007G208300--Sobic003G085000 Sobic007G208300--Sobic004G336000 Sobic004G301200 Sobic004G301200 Sobic007G208300--Sobic004G301200 Sobic001G295300 Sobic001G295300 Sobic007G208300--Sobic001G295300 Sobic007G208300--Sobic001G104800 Sobic006G132000 Sobic006G132000 Sobic007G208300--Sobic006G132000 Sobic004G055500 Sobic004G055500 Sobic007G208300--Sobic004G055500 Sobic003G324700 Sobic003G324700 Sobic007G090400--Sobic003G324700 Sobic002G152800 Sobic002G152800 Sobic007G090400--Sobic002G152800 Sobic007G090400--Sobic001G368500 Sobic007G090400--Sobic006G055800 Sobic003G271900 Sobic003G271900 Sobic007G090400--Sobic003G271900 Sobic007G090400--Sobic001G104800 Sobic007G090400--Sobic004G336000 Sobic007G090400--Sobic001G531400 Sobic003G432500 Sobic003G432500 Sobic007G090400--Sobic003G432500 Sobic004G336000--Sobic001G309300 Sobic001G495200 Sobic001G495200 Sobic004G336000--Sobic001G495200 Sobic008G073100 Sobic008G073100 Sobic004G336000--Sobic008G073100 Sobic004G336000--Sobic001G291900 Sobic004G336000--Sobic003G432500 Sobic004G336000--Sobic006G055800 Sobic004G011300 Sobic004G011300 Sobic004G336000--Sobic004G011300 Sobic004G336000--Sobic003G085000 Sobic003G387100 Sobic003G387100 Sobic004G336000--Sobic003G387100 Sobic006G106400--Sobic004G011300 Sobic006G106400--Sobic008G073100 Sobic008G039600 Sobic008G039600 Sobic006G106400--Sobic008G039600 Sobic006G106400--Sobic001G368500 Sobic005G143500 Sobic005G143500 Sobic006G106400--Sobic005G143500 Sobic002G401800 Sobic002G401800 Sobic006G106400--Sobic002G401800 Sobic001G283700 Sobic001G283700 Sobic006G106400--Sobic001G283700 Sobic009G148500 Sobic009G148500 Sobic006G106400--Sobic009G148500 Sobic002G272100 Sobic002G272100 Sobic006G106400--Sobic002G272100 Sobic003G386300 Sobic003G386300 Sobic001G122400--Sobic003G386300 Sobic004G335800 Sobic004G335800 Sobic001G122400--Sobic004G335800 Sobic001G527100 Sobic001G527100 Sobic001G122400--Sobic001G527100 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic001G104800--Sobic001G291900 Sobic009G030900 Sobic009G030900 Sobic001G104800--Sobic009G030900 Sobic001G104800--Sobic001G368500 Sobic001G104800--Sobic001G469933 Sobic001G104800--Sobic001G122400 Sobic001G104800--Sobic003G324700 Sobic001G104800--Sobic004G335800 Sobic001G104800--Sobic007G090400 Sobic001G104800--Sobic002G152800 Sobic006G055800--Sobic003G432500 Sobic006G055800--Sobic003G324700 Sobic006G055800--Sobic005G002900 Sobic006G055800--Sobic001G469933 Sobic006G055800--Sobic001G368500 Sobic006G055800--Sobic009G148500 Sobic006G055800--Sobic002G152800 Sobic001G083100 Sobic001G083100 Sobic006G055800--Sobic001G083100 Sobic005G110400 Sobic005G110400 Sobic006G055800--Sobic005G110400
Octagon: transcription factors


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