Gene annotation
Transcriptome id Sobic.003G225100.1
Synonym HEME1, Sb03g028330
Functional annotation uroporphyrinogen decarboxylase, putative, expressed
UniProt C5XR61
Pfam PF01208
Panther DB PTHR21091 PTHR21091:SF105
NCBI CDD KOG2872; Uroporphyrinogen decarboxylase
KEGG Orthology K01599; hemE, uroporphyrinogen decarboxylase
Gene Ontology GO:0006779; porphyrin-containing compound biosynthetic process GO:0004853uroporphyrinogen decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G14930 : Uroporphyrinogen decarboxylase
RAP-DB (Rice) LOC_Os01g43390.1 : uroporphyrinogen decarboxylase, putative, expressed
MaizeGDB (Corn) Zm00025a038577 , Zm00025a038575 , Zm00025a038568 , Zm00025a038578 , Zm00025a028376
Brachypodium PNT72418 , KQK08793
Barley HORVU3Hr1G055700.2 , HORVU3Hr1G055700.3 , HORVU3Hr1G055700.4 , HORVU3Hr1G055700.5 , HORVU3Hr1G055700.1
Wheat TraesCS3D02G228800 , TraesCS3A02G224800 , TraesCS3B02G254400 , TraesCS3B02G254400
Populus -


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cDNA sequences
Sobic.003G225100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
2 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
3 Sobic.005G110481 - -
4 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
5 Sobic.004G335800 ribosomal L9, putative, expressed K02939: RP-L9, MRPL9, large subunit ribosomal protein L9
6 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
7 Sobic.002G251400 expressed protein -
8 Sobic.003G386300 expressed protein -
9 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
10 Sobic.003G324700 expressed protein -
11 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
12 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
13 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
14 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
15 Sobic.001G104800 expressed protein -
16 Sobic.002G013700 PPR2, putative, expressed -
17 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
18 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
19 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
20 Sobic.003G271900 expressed protein -


Gene co-expression network
sample Sobic003G225100 Sobic003G225100 Sobic001G122400 Sobic001G122400 Sobic003G225100--Sobic001G122400 Sobic007G171800 Sobic007G171800 Sobic003G225100--Sobic007G171800 Sobic005G110481 Sobic005G110481 Sobic003G225100--Sobic005G110481 Sobic010G095200 Sobic010G095200 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic007G013400 Sobic007G013400 Sobic003G225100--Sobic007G013400 Sobic002G251400 Sobic002G251400 Sobic003G225100--Sobic002G251400 Sobic003G386300 Sobic003G386300 Sobic003G225100--Sobic003G386300 Sobic001G527100 Sobic001G527100 Sobic003G225100--Sobic001G527100 Sobic001G122400--Sobic003G386300 Sobic001G122400--Sobic004G335800 Sobic001G122400--Sobic001G527100 Sobic003G324700 Sobic003G324700 Sobic001G122400--Sobic003G324700 Sobic001G469933 Sobic001G469933 Sobic001G122400--Sobic001G469933 Sobic001G240000 Sobic001G240000 Sobic001G122400--Sobic001G240000 Sobic001G368500 Sobic001G368500 Sobic001G122400--Sobic001G368500 Sobic002G198000 Sobic002G198000 Sobic001G122400--Sobic002G198000 Sobic001G391400 Sobic001G391400 Sobic001G122400--Sobic001G391400 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic010G095200--Sobic003G386300 Sobic010G095200--Sobic001G122400 Sobic010G095200--Sobic001G240000 Sobic007G090537 Sobic007G090537 Sobic010G095200--Sobic007G090537 Sobic004G164100 Sobic004G164100 Sobic010G095200--Sobic004G164100 Sobic010G095200--Sobic001G527100 Sobic010G095200--Sobic002G251400 Sobic010G095200--Sobic002G198000 Sobic009G130800 Sobic009G130800 Sobic010G095200--Sobic009G130800 Sobic001G040000 Sobic001G040000 Sobic004G335800--Sobic001G040000 Sobic004G335800--Sobic001G122400 Sobic004G335800--Sobic003G386300 Sobic004G335800--Sobic001G527100 Sobic004G116100 Sobic004G116100 Sobic004G335800--Sobic004G116100 Sobic004G335800--Sobic003G324700 Sobic007G143700 Sobic007G143700 Sobic004G335800--Sobic007G143700 Sobic004G335800--Sobic001G391400 Sobic004G335800--Sobic001G240000 Sobic003G383500 Sobic003G383500 Sobic007G013400--Sobic003G383500 Sobic003G295800 Sobic003G295800 Sobic007G013400--Sobic003G295800 Sobic009G001500 Sobic009G001500 Sobic007G013400--Sobic009G001500 Sobic003G261200 Sobic003G261200 Sobic007G013400--Sobic003G261200 Sobic001G475600 Sobic001G475600 Sobic007G013400--Sobic001G475600 Sobic007G013400--Sobic002G251400 Sobic003G383600 Sobic003G383600 Sobic007G013400--Sobic003G383600 Sobic007G013400--Sobic001G040000 Sobic007G211100 Sobic007G211100 Sobic007G013400--Sobic007G211100 Sobic002G251400--Sobic001G040000 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800 Sobic003G386300--Sobic001G122400 Sobic003G386300--Sobic004G335800 Sobic003G386300--Sobic001G527100 Sobic003G386300--Sobic002G198000 Sobic003G386300--Sobic001G240000 Sobic003G386300--Sobic010G095200 Sobic003G386300--Sobic001G040000 Sobic003G386300--Sobic004G164100 Sobic003G386300--Sobic001G475600 Sobic001G527100--Sobic001G240000 Sobic001G527100--Sobic001G122400 Sobic001G527100--Sobic002G198000 Sobic001G527100--Sobic004G335800 Sobic001G527100--Sobic003G386300 Sobic001G527100--Sobic004G164100 Sobic001G527100--Sobic001G391400 Sobic001G527100--Sobic001G040000 Sobic003G328200 Sobic003G328200 Sobic001G527100--Sobic003G328200
Octagon: transcription factors


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