Gene annotation
Transcriptome id Sobic.007G090537.1
Synonym -
Functional annotation -
UniProt C5YJJ6
Pfam PF00344
Panther DB PTHR10906 PTHR10906:SF9
NCBI CDD -
KEGG Orthology K10956; protein transport protein SEC61 subunit alpha
Gene Ontology GO:0016020; membrane GO:0015031protein transport


Orthologs (automatic annotation)
TAIR AT2G18710 : SECY homolog 1
RAP-DB (Rice) LOC_Os08g15460.1 : preprotein translocase subunit secY, putative, expressed
MaizeGDB (Corn) Zm00025a054693
Brachypodium KQJ95801 , PNT66981 , PNT66980
Barley HORVU5Hr1G049980.10 , HORVU5Hr1G049980.13 , HORVU5Hr1G049980.9 , HORVU5Hr1G049980.8 , HORVU5Hr1G049980.5 , HORVU5Hr1G049980.4 , HORVU5Hr1G049980.7 , HORVU5Hr1G049980.6 , HORVU5Hr1G049980.1 , HORVU5Hr1G049980.3 , HORVU5Hr1G049980.11 , HORVU5Hr1G049980.12
Wheat TraesCS5A02G159800 , TraesCS5B02G157500 , TraesCS5D02G164800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G130800 tat pathway signal sequence family protein, expressed -
2 Sobic.010G095200 glutathione S-transferase, N-terminal domain containing protein, expressed -
3 Sobic.003G261200 formyl transferase, putative, expressed K00604: MTFMT, methionyl-tRNA formyltransferase
4 Sobic.003G292300 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
5 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
6 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase
7 Sobic.005G110481 - -
8 Sobic.004G164100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.001G058400 pentatricopeptide, putative, expressed -
10 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
11 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
12 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
13 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
14 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
15 Sobic.003G386300 expressed protein -
16 Sobic.009G001500 peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
17 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
18 Sobic.002G251400 expressed protein -
19 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
20 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13


Gene co-expression network
sample Sobic007G090537 Sobic007G090537 Sobic009G130800 Sobic009G130800 Sobic007G090537--Sobic009G130800 Sobic010G095200 Sobic010G095200 Sobic007G090537--Sobic010G095200 Sobic003G261200 Sobic003G261200 Sobic007G090537--Sobic003G261200 Sobic003G292300 Sobic003G292300 Sobic007G090537--Sobic003G292300 Sobic007G171800 Sobic007G171800 Sobic007G090537--Sobic007G171800 Sobic003G225100 Sobic003G225100 Sobic007G090537--Sobic003G225100 Sobic005G110481 Sobic005G110481 Sobic007G090537--Sobic005G110481 Sobic004G164100 Sobic004G164100 Sobic007G090537--Sobic004G164100 Sobic001G058400 Sobic001G058400 Sobic007G090537--Sobic001G058400 Sobic009G130800--Sobic007G090537 Sobic009G130800--Sobic003G261200 Sobic009G130800--Sobic010G095200 Sobic007G013400 Sobic007G013400 Sobic009G130800--Sobic007G013400 Sobic003G295800 Sobic003G295800 Sobic009G130800--Sobic003G295800 Sobic009G130800--Sobic004G164100 Sobic009G001500 Sobic009G001500 Sobic009G130800--Sobic009G001500 Sobic001G475600 Sobic001G475600 Sobic009G130800--Sobic001G475600 Sobic007G211100 Sobic007G211100 Sobic009G130800--Sobic007G211100 Sobic003G386300 Sobic003G386300 Sobic010G095200--Sobic003G386300 Sobic001G122400 Sobic001G122400 Sobic010G095200--Sobic001G122400 Sobic001G240000 Sobic001G240000 Sobic010G095200--Sobic001G240000 Sobic010G095200--Sobic007G090537 Sobic010G095200--Sobic004G164100 Sobic001G527100 Sobic001G527100 Sobic010G095200--Sobic001G527100 Sobic002G251400 Sobic002G251400 Sobic010G095200--Sobic002G251400 Sobic002G198000 Sobic002G198000 Sobic010G095200--Sobic002G198000 Sobic010G095200--Sobic009G130800 Sobic003G261200--Sobic007G013400 Sobic003G261200--Sobic009G130800 Sobic003G383500 Sobic003G383500 Sobic003G261200--Sobic003G383500 Sobic003G261200--Sobic003G295800 Sobic003G261200--Sobic010G095200 Sobic003G261200--Sobic009G001500 Sobic003G261200--Sobic007G090537 Sobic003G261200--Sobic007G211100 Sobic001G069500 Sobic001G069500 Sobic003G261200--Sobic001G069500 Sobic003G292300--Sobic005G110481 Sobic003G292300--Sobic001G069500 Sobic010G011200 Sobic010G011200 Sobic003G292300--Sobic010G011200 Sobic003G292300--Sobic007G090537 Sobic003G292300--Sobic009G001500 Sobic003G292300--Sobic003G295800 Sobic003G292300--Sobic003G225100 Sobic003G383600 Sobic003G383600 Sobic003G292300--Sobic003G383600 Sobic003G292300--Sobic007G013400 Sobic007G171800--Sobic010G011200 Sobic007G171800--Sobic005G110481 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic003G225100--Sobic001G122400 Sobic003G225100--Sobic007G171800 Sobic003G225100--Sobic005G110481 Sobic003G225100--Sobic010G095200 Sobic004G335800 Sobic004G335800 Sobic003G225100--Sobic004G335800 Sobic003G225100--Sobic007G013400 Sobic003G225100--Sobic002G251400 Sobic003G225100--Sobic003G386300 Sobic003G225100--Sobic001G527100 Sobic005G110481--Sobic010G011200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic009G104700 Sobic009G104700 Sobic005G110481--Sobic009G104700 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic004G164100--Sobic002G198000 Sobic004G164100--Sobic001G527100 Sobic004G164100--Sobic003G386300 Sobic004G164100--Sobic002G251400 Sobic004G164100--Sobic001G240000 Sobic004G164100--Sobic001G122400 Sobic004G164100--Sobic010G095200 Sobic004G164100--Sobic004G335800 Sobic004G326500 Sobic004G326500 Sobic004G164100--Sobic004G326500 Sobic001G058400--Sobic007G090537 Sobic001G058400--Sobic010G095200 Sobic001G058400--Sobic007G171800 Sobic001G058400--Sobic007G034500 Sobic006G263800 Sobic006G263800 Sobic001G058400--Sobic006G263800 Sobic001G058400--Sobic003G225100 Sobic001G058400--Sobic001G148200 Sobic001G058400--Sobic009G130800 Sobic001G058400--Sobic007G013400
Octagon: transcription factors


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