Gene annotation
Transcriptome id Sobic.009G251000.3,Sobic.009G251000.1,Sobic.009G251000.2
Synonym PTAC14, Sb09g030160
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
SET domain containing protein, expressed
UniProt C5YWL9 , A0A1Z5R413
Pfam PF09273 PF00856
Panther DB PTHR13271 PTHR13271:SF23
NCBI CDD KOG1337; N-methyltransferase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G20130 : plastid transcriptionally active 14
RAP-DB (Rice) LOC_Os05g50980.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036747
Brachypodium PNT70628 , KQK04625
Barley -
Wheat TraesCS1B02G462200 , TraesCS1A02G427200 , TraesCS1A02G427200 , TraesCS1D02G437000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
2 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
3 Sobic.005G110481 - -
4 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
5 Sobic.007G015300 calreticulin family protein, expressed -
6 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
8 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
9 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
10 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
11 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.001G025800 pentatricopeptide, putative, expressed -
13 Sobic.007G116100 thioredoxin, putative, expressed -
14 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
15 Sobic.002G013700 PPR2, putative, expressed -
16 Sobic.001G099000 expressed protein -
17 Sobic.002G221600 expressed protein -
18 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
19 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
20 Sobic.003G373300 DNA polymerase I, putative, expressed -


Gene co-expression network
sample Sobic009G251000 Sobic009G251000 Sobic009G104700 Sobic009G104700 Sobic009G251000--Sobic009G104700 Sobic002G140000 Sobic002G140000 Sobic009G251000--Sobic002G140000 Sobic005G110481 Sobic005G110481 Sobic009G251000--Sobic005G110481 Sobic010G011200 Sobic010G011200 Sobic009G251000--Sobic010G011200 Sobic007G015300 Sobic007G015300 Sobic009G251000--Sobic007G015300 Sobic010G027200 Sobic010G027200 Sobic009G251000--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic009G251000--Sobic006G237100 Sobic007G090537 Sobic007G090537 Sobic009G251000--Sobic007G090537 Sobic002G045700 Sobic002G045700 Sobic009G251000--Sobic002G045700 Sobic009G104700--Sobic005G110481 Sobic002G158800 Sobic002G158800 Sobic009G104700--Sobic002G158800 Sobic007G101300 Sobic007G101300 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic009G104700--Sobic002G013700 Sobic005G184300 Sobic005G184300 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic003G128400 Sobic003G128400 Sobic009G104700--Sobic003G128400 Sobic003G373300 Sobic003G373300 Sobic009G104700--Sobic003G373300 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic005G110481--Sobic002G013700 Sobic002G251400 Sobic002G251400 Sobic005G110481--Sobic002G251400 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic009G130800 Sobic009G130800 Sobic007G090537--Sobic009G130800 Sobic010G095200 Sobic010G095200 Sobic007G090537--Sobic010G095200 Sobic003G261200 Sobic003G261200 Sobic007G090537--Sobic003G261200 Sobic003G292300 Sobic003G292300 Sobic007G090537--Sobic003G292300 Sobic007G090537--Sobic007G171800 Sobic003G225100 Sobic003G225100 Sobic007G090537--Sobic003G225100 Sobic007G090537--Sobic005G110481 Sobic004G164100 Sobic004G164100 Sobic007G090537--Sobic004G164100 Sobic001G058400 Sobic001G058400 Sobic007G090537--Sobic001G058400 Sobic002G045700--Sobic002G140000 Sobic002G045700--Sobic004G338300 Sobic001G228300 Sobic001G228300 Sobic002G045700--Sobic001G228300 Sobic002G045700--Sobic009G251000 Sobic002G045700--Sobic007G015300 Sobic002G045700--Sobic010G027200 Sobic006G110200 Sobic006G110200 Sobic002G045700--Sobic006G110200 Sobic002G045700--Sobic007G116100 Sobic002G045700--Sobic010G011200
Octagon: transcription factors


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