Gene annotation
Transcriptome id Sobic.002G045700.1
Synonym Sb02g003900, RIF10, PNP
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polynucleotide phosphorylase, putative, expressed
UniProt A0A1B6Q972
Pfam PF00013 PF00575 PF03725 PF01138
Panther DB PTHR11252 PTHR11252:SF0
NCBI CDD -
KEGG Orthology K00962; pnp, polyribonucleotide nucleotidyltransferase
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding GO:0006402mRNA catabolic process GO:0004654polyribonucleotide nucleotidyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G03710 : polyribonucleotide nucleotidyltransferase, putative
RAP-DB (Rice) LOC_Os07g07310.1 : polynucleotide phosphorylase, putative, expressed
MaizeGDB (Corn) Zm00025a045101
Brachypodium KQK20721
Barley HORVU2Hr1G056650.14 , HORVU2Hr1G056650.15 , HORVU2Hr1G056650.16 , HORVU2Hr1G056650.17 , HORVU2Hr1G056650.10 , HORVU2Hr1G056650.11 , HORVU2Hr1G056650.12 , HORVU2Hr1G056650.13 , HORVU2Hr1G056650.18 , HORVU2Hr1G056710.3 , HORVU2Hr1G056650.8 , HORVU2Hr1G056650.9 , HORVU2Hr1G056650.6 , HORVU2Hr1G056650.7 , HORVU2Hr1G056650.4 , HORVU2Hr1G056650.5 , HORVU2Hr1G056650.2 , HORVU2Hr1G056650.3 , HORVU2Hr1G056650.1 , HORVU2Hr1G056710.2 , HORVU2Hr1G056710.1 , HORVU2Hr1G056710.6 , HORVU2Hr1G056710.5 , HORVU2Hr1G056710.4
Wheat TraesCS2A02G239200 , TraesCS2A02G239200 , TraesCS2A02G239200 , TraesCS2D02G246100 , TraesCS2D02G246100 , TraesCS2D02G246100 , TraesCS2B02G257300
Populus PNT07072 , PNT07073 , PNT07070 , PNT07071


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cDNA sequences
Sobic.002G045700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
2 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
3 Sobic.001G228300 SAP domain containing protein, expressed -
4 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
5 Sobic.007G015300 calreticulin family protein, expressed -
6 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
8 Sobic.007G116100 thioredoxin, putative, expressed -
9 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
10 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
11 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
12 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
13 Sobic.001G099000 expressed protein -
14 Sobic.004G255500 SET domain-containing protein, putative, expressed -
15 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
16 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
17 Sobic.001G148200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@antitermination NusB domain-containing protein, putative, expressed -
18 Sobic.008G153200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase, putative, expressed -
19 Sobic.002G124100 - -
20 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein


Gene co-expression network
sample Sobic002G045700 Sobic002G045700 Sobic002G140000 Sobic002G140000 Sobic002G045700--Sobic002G140000 Sobic004G338300 Sobic004G338300 Sobic002G045700--Sobic004G338300 Sobic001G228300 Sobic001G228300 Sobic002G045700--Sobic001G228300 Sobic009G251000 Sobic009G251000 Sobic002G045700--Sobic009G251000 Sobic007G015300 Sobic007G015300 Sobic002G045700--Sobic007G015300 Sobic010G027200 Sobic010G027200 Sobic002G045700--Sobic010G027200 Sobic006G110200 Sobic006G110200 Sobic002G045700--Sobic006G110200 Sobic007G116100 Sobic007G116100 Sobic002G045700--Sobic007G116100 Sobic010G011200 Sobic010G011200 Sobic002G045700--Sobic010G011200 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic006G237100 Sobic006G237100 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic002G158800 Sobic002G158800 Sobic004G338300--Sobic002G158800 Sobic004G338300--Sobic007G015300 Sobic004G338300--Sobic001G099000 Sobic004G338300--Sobic010G027200 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic009G104700 Sobic009G104700 Sobic004G338300--Sobic009G104700 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700 Sobic001G395300 Sobic001G395300 Sobic001G228300--Sobic001G395300 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic001G228300--Sobic007G116100 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic001G228300--Sobic006G110200 Sobic009G251000--Sobic009G104700 Sobic009G251000--Sobic002G140000 Sobic005G110481 Sobic005G110481 Sobic009G251000--Sobic005G110481 Sobic009G251000--Sobic010G011200 Sobic009G251000--Sobic007G015300 Sobic009G251000--Sobic010G027200 Sobic009G251000--Sobic006G237100 Sobic007G090537 Sobic007G090537 Sobic009G251000--Sobic007G090537 Sobic009G251000--Sobic002G045700 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic003G039300 Sobic003G039300 Sobic006G110200--Sobic003G039300 Sobic007G069400 Sobic007G069400 Sobic006G110200--Sobic007G069400 Sobic006G110200--Sobic002G140000 Sobic001G537700 Sobic001G537700 Sobic006G110200--Sobic001G537700 Sobic009G137000 Sobic009G137000 Sobic006G110200--Sobic009G137000 Sobic006G110200--Sobic007G015300 Sobic006G110200--Sobic002G045700 Sobic006G110200--Sobic010G027200 Sobic006G110200--Sobic001G228300 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic010G011200--Sobic005G110481 Sobic007G171800 Sobic007G171800 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100
Octagon: transcription factors


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