Gene annotation
Transcriptome id Sobic.004G255500.1
Synonym Sb04g029430
Functional annotation SET domain-containing protein, putative, expressed
UniProt C5XZR8
Pfam PF09273 PF00856
Panther DB PTHR13271:SF44 PTHR13271
NCBI CDD KOG1337; N-methyltransferase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07670 : Rubisco methyltransferase family protein
RAP-DB (Rice) LOC_Os02g49326.1 : SET domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032563
Brachypodium KQK01525
Barley HORVU6Hr1G072050.3 , HORVU6Hr1G072050.2 , HORVU6Hr1G072050.1 , HORVU6Hr1G072050.6 , HORVU6Hr1G072050.7 , HORVU6Hr1G072050.4 , HORVU6Hr1G072050.5 , HORVU6Hr1G072050.8 , HORVU6Hr1G072050.9 , HORVU6Hr1G072050.10 , HORVU6Hr1G072050.11 , HORVU6Hr1G072050.12 , HORVU6Hr1G072050.13 , HORVU6Hr1G072050.14 , HORVU6Hr1G072050.15 , HORVU6Hr1G072050.16 , HORVU6Hr1G072050.17 , HORVU6Hr1G072050.18
Wheat TraesCS6D02G267500 , TraesCS6D02G267500 , TraesCS6B02G315800 , TraesCS6A02G286800 , TraesCS6A02G286800
Populus -


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cDNA sequences
Sobic.004G255500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099000 expressed protein -
2 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
3 Sobic.005G022800 GTP binding protein, putative, expressed -
4 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.002G013700 PPR2, putative, expressed -
6 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
8 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
9 Sobic.007G015300 calreticulin family protein, expressed -
10 Sobic.005G197300 GTP-binding protein, putative, expressed K03977: engA, GTPase
11 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
12 Sobic.005G110481 - -
13 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
14 Sobic.003G045300 cobalt ion transporter, putative, expressed -
15 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
16 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
17 Sobic.001G337600 expressed protein -
18 Sobic.001G054100 spo0B-associated GTP-binding protein, putative, expressed -
19 Sobic.002G181132 - -
20 Sobic.007G116100 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic004G255500 Sobic004G255500 Sobic001G099000 Sobic001G099000 Sobic004G255500--Sobic001G099000 Sobic001G448600 Sobic001G448600 Sobic004G255500--Sobic001G448600 Sobic005G022800 Sobic005G022800 Sobic004G255500--Sobic005G022800 Sobic001G281500 Sobic001G281500 Sobic004G255500--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic004G255500--Sobic002G013700 Sobic010G027200 Sobic010G027200 Sobic004G255500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic004G255500--Sobic005G184300 Sobic002G140000 Sobic002G140000 Sobic004G255500--Sobic002G140000 Sobic007G015300 Sobic007G015300 Sobic004G255500--Sobic007G015300 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic001G375000 Sobic001G375000 Sobic001G448600--Sobic001G375000 Sobic001G448600--Sobic004G255500 Sobic001G448600--Sobic002G140000 Sobic001G448600--Sobic001G281500 Sobic001G448600--Sobic002G013700 Sobic009G104700 Sobic009G104700 Sobic001G448600--Sobic009G104700 Sobic001G448600--Sobic007G015300 Sobic003G128400 Sobic003G128400 Sobic001G448600--Sobic003G128400 Sobic001G448600--Sobic010G027200 Sobic005G022800--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic005G022800--Sobic006G263800 Sobic005G022800--Sobic004G255500 Sobic005G022800--Sobic003G373300 Sobic005G197300 Sobic005G197300 Sobic005G022800--Sobic005G197300 Sobic005G022800--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic005G022800--Sobic007G116100 Sobic005G022800--Sobic010G027200 Sobic008G021700 Sobic008G021700 Sobic005G022800--Sobic008G021700 Sobic006G237100 Sobic006G237100 Sobic001G281500--Sobic006G237100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic001G281500--Sobic006G263800 Sobic001G281500--Sobic010G027200 Sobic001G281500--Sobic005G184300 Sobic005G110481 Sobic005G110481 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic010G011200 Sobic010G011200 Sobic002G013700--Sobic010G011200 Sobic007G101300 Sobic007G101300 Sobic002G013700--Sobic007G101300 Sobic002G251400 Sobic002G251400 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G013700--Sobic002G158800 Sobic001G148200 Sobic001G148200 Sobic002G013700--Sobic001G148200 Sobic009G042200 Sobic009G042200 Sobic002G013700--Sobic009G042200 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic005G184300--Sobic001G099000 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400
Octagon: transcription factors


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