Gene annotation
Transcriptome id Sobic.001G281500.1
Synonym NCLPP4, CLPP4, Sb01g027680
Functional annotation OsClp11 - Putative Clp protease homologue, expressed
UniProt C5WQL6
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF24
NCBI CDD -
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G45390 : CLP protease P4
RAP-DB (Rice) LOC_Os10g43050.1 : OsClp11 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a003579 , Zm00025a018087
Brachypodium KQJ96221
Barley HORVU1Hr1G051420.3 , HORVU1Hr1G051420.2 , HORVU1Hr1G051420.1 , HORVU1Hr1G051420.5
Wheat TraesCS1B02G213300 , TraesCS1D02G202100 , TraesCS1A02G198400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
2 Sobic.007G116100 thioredoxin, putative, expressed -
3 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
4 Sobic.001G099000 expressed protein -
5 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
6 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
7 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
8 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
10 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
11 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.002G013700 PPR2, putative, expressed -
13 Sobic.005G110481 - -
14 Sobic.007G101300 expressed protein -
15 Sobic.004G255500 SET domain-containing protein, putative, expressed -
16 Sobic.001G514100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
19 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
20 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein


Gene co-expression network
sample Sobic001G281500 Sobic001G281500 Sobic006G237100 Sobic006G237100 Sobic001G281500--Sobic006G237100 Sobic007G116100 Sobic007G116100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic010G027200 Sobic010G027200 Sobic001G281500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic001G281500--Sobic005G184300 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic007G116100--Sobic010G027200 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G015300 Sobic007G015300 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic003G256200 Sobic003G256200 Sobic006G107600--Sobic003G256200 Sobic001G240000 Sobic001G240000 Sobic006G107600--Sobic001G240000 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic001G391400 Sobic001G391400 Sobic006G107600--Sobic001G391400 Sobic002G305700 Sobic002G305700 Sobic006G107600--Sobic002G305700 Sobic001G122400 Sobic001G122400 Sobic006G107600--Sobic001G122400 Sobic001G191000 Sobic001G191000 Sobic006G107600--Sobic001G191000 Sobic001G453300 Sobic001G453300 Sobic006G107600--Sobic001G453300 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic003G128400 Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic010G011200 Sobic010G011200 Sobic007G171800--Sobic010G011200 Sobic005G110481 Sobic005G110481 Sobic007G171800--Sobic005G110481 Sobic002G251400 Sobic002G251400 Sobic007G171800--Sobic002G251400 Sobic002G131700 Sobic002G131700 Sobic007G171800--Sobic002G131700 Sobic009G042200 Sobic009G042200 Sobic007G171800--Sobic009G042200 Sobic001G148200 Sobic001G148200 Sobic007G171800--Sobic001G148200 Sobic003G324700 Sobic003G324700 Sobic007G171800--Sobic003G324700 Sobic007G034500 Sobic007G034500 Sobic007G171800--Sobic007G034500 Sobic010G035200 Sobic010G035200 Sobic007G171800--Sobic010G035200 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic006G263800--Sobic001G281500 Sobic006G263800--Sobic005G022800 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.