Gene annotation
Transcriptome id Sobic.006G237100.1
Synonym Sb06g030390
Functional annotation amidase, putative, expressed
UniProt C5Y8Z8
Pfam PF01425
Panther DB PTHR11895 PTHR11895:SF101
NCBI CDD KOG1211; Amidases
KEGG Orthology K02433; gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
Gene Ontology GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor


Orthologs (automatic annotation)
TAIR AT3G25660 : Amidase family protein
RAP-DB (Rice) LOC_Os04g55050.1 : amidase, putative, expressed
MaizeGDB (Corn) Zm00025a009577
Brachypodium KQJ84913
Barley HORVU2Hr1G115000.4 , HORVU2Hr1G115000.1 , HORVU2Hr1G115000.3 , HORVU2Hr1G115000.2
Wheat TraesCS2B02G549500 , TraesCS2A02G520300 , TraesCS2D02G521500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
4 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
5 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
6 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
7 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
8 Sobic.007G116100 thioredoxin, putative, expressed -
9 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
10 Sobic.007G015300 calreticulin family protein, expressed -
11 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
12 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
13 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
14 Sobic.001G445200 expressed protein -
15 Sobic.003G162800 expressed protein -
16 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.002G013700 PPR2, putative, expressed -
18 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
19 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
20 Sobic.003G225100 uroporphyrinogen decarboxylase, putative, expressed K01599: hemE, uroporphyrinogen decarboxylase


Gene co-expression network
sample Sobic006G237100 Sobic006G237100 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic001G281500--Sobic006G237100 Sobic001G281500--Sobic007G116100 Sobic006G107600 Sobic006G107600 Sobic001G281500--Sobic006G107600 Sobic001G099000 Sobic001G099000 Sobic001G281500--Sobic001G099000 Sobic001G281500--Sobic001G375000 Sobic007G171800 Sobic007G171800 Sobic001G281500--Sobic007G171800 Sobic006G263800 Sobic006G263800 Sobic001G281500--Sobic006G263800 Sobic001G281500--Sobic010G027200 Sobic005G184300 Sobic005G184300 Sobic001G281500--Sobic005G184300 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic003G128400 Sobic003G128400 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic009G234200 Sobic009G234200 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic003G286300 Sobic003G286300 Sobic001G161400--Sobic003G286300 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic001G437200--Sobic003G310100 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G437200--Sobic001G445200 Sobic001G437200--Sobic003G286300 Sobic001G437200--Sobic001G161400 Sobic007G116100--Sobic010G027200 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600
Octagon: transcription factors


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