Gene annotation
Transcriptome id Sobic.001G437200.2,Sobic.001G437200.1
Synonym Sb01g041120
Functional annotation ATP-dependent Clp protease ATP-binding subunit, putative, expressed
UniProt C5WQY5
Pfam PF02861
Panther DB PTHR11638 PTHR11638:SF105
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25370 : Double Clp-N motif protein
RAP-DB (Rice) LOC_Os03g14280.1 : ATP-dependent Clp protease ATP-binding subunit, putative, expressed
MaizeGDB (Corn) Zm00025a052883 , Zm00025a001563
Brachypodium -
Barley -
Wheat TraesCS4D02G225100 , TraesCS4B02G224500 , TraesCS4A02G079500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G298400 expressed protein -
2 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
3 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
4 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
5 Sobic.009G131600 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
6 Sobic.001G424300 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K08081: tropinone reductase I
7 Sobic.001G445200 expressed protein -
8 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
9 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
10 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
11 Sobic.001G305700 Mur ligase family protein, putative, expressed -
12 Sobic.002G056800 YGGT family protein, putative, expressed -
13 Sobic.007G116100 thioredoxin, putative, expressed -
14 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
15 Sobic.003G330100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast ribonuclease III domain protein, putative, expressed -
16 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
18 Sobic.003G444500 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
19 Sobic.003G162800 expressed protein -
20 Sobic.010G073700 chaperonin, putative, expressed K04078: groES, chaperonin GroES


Gene co-expression network
sample Sobic001G437200 Sobic001G437200 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic006G237100 Sobic006G237100 Sobic001G437200--Sobic006G237100 Sobic003G310100 Sobic003G310100 Sobic001G437200--Sobic003G310100 Sobic002G404900 Sobic002G404900 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G445200 Sobic001G445200 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G161400 Sobic001G161400 Sobic001G437200--Sobic001G161400 Sobic003G298400--Sobic001G437200 Sobic003G298400--Sobic009G131600 Sobic007G116100 Sobic007G116100 Sobic003G298400--Sobic007G116100 Sobic003G298400--Sobic001G445200 Sobic003G298400--Sobic001G424300 Sobic003G298400--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic003G298400--Sobic002G156100 Sobic001G375000 Sobic001G375000 Sobic003G298400--Sobic001G375000 Sobic010G073700 Sobic010G073700 Sobic003G298400--Sobic010G073700 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic006G237100--Sobic003G310100 Sobic003G310100--Sobic001G424300 Sobic002G056800 Sobic002G056800 Sobic003G310100--Sobic002G056800 Sobic001G196200 Sobic001G196200 Sobic003G310100--Sobic001G196200 Sobic001G489800 Sobic001G489800 Sobic003G310100--Sobic001G489800 Sobic003G310100--Sobic001G437200 Sobic003G310100--Sobic001G281500 Sobic003G310100--Sobic006G237100 Sobic002G424100 Sobic002G424100 Sobic003G310100--Sobic002G424100 Sobic006G111600 Sobic006G111600 Sobic003G310100--Sobic006G111600 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic006G055800 Sobic006G055800 Sobic009G131600--Sobic006G055800 Sobic007G171800 Sobic007G171800 Sobic009G131600--Sobic007G171800 Sobic010G035200 Sobic010G035200 Sobic009G131600--Sobic010G035200 Sobic003G324700 Sobic003G324700 Sobic009G131600--Sobic003G324700 Sobic002G131700 Sobic002G131700 Sobic009G131600--Sobic002G131700 Sobic003G128400 Sobic003G128400 Sobic009G131600--Sobic003G128400 Sobic007G090400 Sobic007G090400 Sobic009G131600--Sobic007G090400 Sobic005G002900 Sobic005G002900 Sobic009G131600--Sobic005G002900 Sobic009G131600--Sobic002G056800 Sobic001G424300--Sobic003G310100 Sobic001G424300--Sobic001G489800 Sobic001G424300--Sobic003G128400 Sobic001G424300--Sobic009G131600 Sobic001G424300--Sobic001G281500 Sobic001G424300--Sobic005G002900 Sobic001G424300--Sobic006G055800 Sobic001G424300--Sobic002G156100 Sobic001G424300--Sobic001G437200 Sobic001G445200--Sobic006G237100 Sobic001G445200--Sobic005G009300 Sobic001G445200--Sobic001G437200 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic001G445200--Sobic003G310100 Sobic001G445200--Sobic002G156100 Sobic002G409900 Sobic002G409900 Sobic001G445200--Sobic002G409900 Sobic003G162800 Sobic003G162800 Sobic001G445200--Sobic003G162800 Sobic001G450600 Sobic001G450600 Sobic003G286300--Sobic001G450600 Sobic003G084500 Sobic003G084500 Sobic003G286300--Sobic003G084500 Sobic009G234200 Sobic009G234200 Sobic003G286300--Sobic009G234200 Sobic003G221700 Sobic003G221700 Sobic003G286300--Sobic003G221700 Sobic003G444500 Sobic003G444500 Sobic003G286300--Sobic003G444500 Sobic004G179200 Sobic004G179200 Sobic003G286300--Sobic004G179200 Sobic002G297400 Sobic002G297400 Sobic003G286300--Sobic002G297400 Sobic003G439600 Sobic003G439600 Sobic003G286300--Sobic003G439600 Sobic003G330100 Sobic003G330100 Sobic003G286300--Sobic003G330100 Sobic001G161400--Sobic006G237100 Sobic003G039300 Sobic003G039300 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic001G161400--Sobic003G084500 Sobic001G161400--Sobic003G286300
Octagon: transcription factors


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