Gene annotation
Transcriptome id Sobic.002G404900.1
Synonym Sb02g041930
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA pseudouridine synthase, putative, expressed
UniProt C5X4R9
Pfam PF00849
Panther DB PTHR11079 PTHR11079:SF79
NCBI CDD KOG1919; RNA pseudouridylate synthases
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT4G21770 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os07g46600.1 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a015357
Brachypodium KQK14837 , KQK14836 , PNT74617 , KQK14838
Barley HORVU2Hr1G022410.31 , HORVU2Hr1G022410.30 , HORVU2Hr1G022410.32 , HORVU2Hr1G022410.26 , HORVU2Hr1G022410.27 , HORVU2Hr1G022410.24 , HORVU2Hr1G022410.25 , HORVU2Hr1G022410.22 , HORVU2Hr1G022410.23 , HORVU2Hr1G022410.20 , HORVU2Hr1G022410.21 , HORVU2Hr1G022410.28 , HORVU2Hr1G022410.29 , HORVU2Hr1G022410.7 , HORVU2Hr1G022410.6 , HORVU2Hr1G022410.5 , HORVU2Hr1G022410.4 , HORVU2Hr1G022410.3 , HORVU2Hr1G022410.2 , HORVU2Hr1G022410.1 , HORVU2Hr1G022410.9 , HORVU2Hr1G022410.8 , HORVU2Hr1G022410.19 , HORVU2Hr1G022410.18 , HORVU2Hr1G022410.17 , HORVU2Hr1G022410.16 , HORVU2Hr1G022410.15 , HORVU2Hr1G022410.14 , HORVU2Hr1G022410.13 , HORVU2Hr1G022410.12 , HORVU2Hr1G022410.11 , HORVU2Hr1G022410.10
Wheat TraesCS2D02G130400 , TraesCS2B02G150200 , TraesCS2A02G128100 , TraesCS2A02G128100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
2 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
3 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
4 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
5 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
6 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
7 Sobic.005G009300 expressed protein -
8 Sobic.001G445200 expressed protein -
9 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
10 Sobic.003G039300 expressed protein -
11 Sobic.003G286300 GTPase of unknown function domain containing protein, putative, expressed K03978: GTP-binding protein
12 Sobic.003G162800 expressed protein -
13 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
14 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
15 Sobic.009G234200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@16S rRNA processing protein RimM containing protein, expressed -
16 Sobic.010G074200 - -
17 Sobic.003G310100 ABC transporter, ATP-binding protein, putative, expressed -
18 Sobic.003G342700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin, putative, expressed -
19 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
20 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -


Gene co-expression network
sample Sobic002G404900 Sobic002G404900 Sobic006G237100 Sobic006G237100 Sobic002G404900--Sobic006G237100 Sobic009G137000 Sobic009G137000 Sobic002G404900--Sobic009G137000 Sobic001G395300 Sobic001G395300 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic001G161400 Sobic001G161400 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic006G204100 Sobic006G204100 Sobic002G404900--Sobic006G204100 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic010G027200 Sobic010G027200 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic002G140000 Sobic002G140000 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic007G116100 Sobic007G116100 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic009G137000--Sobic001G395300 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200 Sobic003G298400 Sobic003G298400 Sobic001G437200--Sobic003G298400 Sobic001G437200--Sobic006G237100 Sobic001G437200--Sobic003G310100 Sobic001G437200--Sobic002G404900 Sobic009G131600 Sobic009G131600 Sobic001G437200--Sobic009G131600 Sobic001G424300 Sobic001G424300 Sobic001G437200--Sobic001G424300 Sobic001G437200--Sobic001G445200 Sobic003G286300 Sobic003G286300 Sobic001G437200--Sobic003G286300 Sobic001G437200--Sobic001G161400 Sobic007G227600 Sobic007G227600 Sobic009G036300--Sobic007G227600 Sobic001G388400 Sobic001G388400 Sobic009G036300--Sobic001G388400 Sobic010G074200 Sobic010G074200 Sobic009G036300--Sobic010G074200 Sobic010G028000 Sobic010G028000 Sobic009G036300--Sobic010G028000 Sobic010G074100 Sobic010G074100 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G234200 Sobic009G234200 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic001G161400--Sobic006G237100 Sobic001G161400--Sobic003G039300 Sobic001G161400--Sobic006G204100 Sobic003G330100 Sobic003G330100 Sobic001G161400--Sobic003G330100 Sobic001G161400--Sobic002G404900 Sobic003G444500 Sobic003G444500 Sobic001G161400--Sobic003G444500 Sobic001G161400--Sobic009G234200 Sobic003G084500 Sobic003G084500 Sobic001G161400--Sobic003G084500 Sobic001G161400--Sobic003G286300 Sobic005G009300--Sobic001G445200 Sobic005G009300--Sobic002G404900 Sobic003G162800 Sobic003G162800 Sobic005G009300--Sobic003G162800 Sobic005G009300--Sobic006G237100 Sobic002G409900 Sobic002G409900 Sobic005G009300--Sobic002G409900 Sobic005G009300--Sobic009G137000 Sobic005G009300--Sobic001G395300 Sobic003G170200 Sobic003G170200 Sobic005G009300--Sobic003G170200 Sobic003G283800 Sobic003G283800 Sobic005G009300--Sobic003G283800 Sobic001G445200--Sobic006G237100 Sobic001G445200--Sobic005G009300 Sobic001G445200--Sobic001G437200 Sobic001G445200--Sobic001G281500 Sobic001G445200--Sobic002G404900 Sobic001G445200--Sobic003G310100 Sobic002G156100 Sobic002G156100 Sobic001G445200--Sobic002G156100 Sobic001G445200--Sobic002G409900 Sobic001G445200--Sobic003G162800 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic006G204100--Sobic001G388400 Sobic006G204100--Sobic009G234200 Sobic006G204100--Sobic003G330100 Sobic006G204100--Sobic009G233800 Sobic006G204100--Sobic010G028000 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200
Octagon: transcription factors


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