Gene annotation
Transcriptome id Sobic.009G238100.2
Synonym AtWTF1, Sb09g029040, WTF1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt A0A1Z5R3U6
Pfam PF11955
Panther DB PTHR31476 PTHR31476:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01037 : Ubiquitin carboxyl-terminal hydrolase family protein
RAP-DB (Rice) LOC_Os05g49610.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a036656
Brachypodium KQK04780
Barley HORVU1Hr1G090100.1
Wheat TraesCS1D02G417900
Populus -


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cDNA sequences
Sobic.009G238100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
2 Sobic.001G426400 expressed protein -
3 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
4 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
5 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
6 Sobic.009G036300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K13354: SLC25A17, solute carrier family 25 (peroxisomal adenine nucleotide transporter), member 17
7 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
8 Sobic.007G227600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
10 Sobic.001G388400 expressed protein -
11 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
12 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
13 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
15 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
16 Sobic.002G287000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
17 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
19 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
20 Sobic.010G074100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1270, putative, expressed -


Gene co-expression network
sample Sobic009G238100 Sobic009G238100 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic008G148400--Sobic009G238100 Sobic008G148400--Sobic001G426400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic007G131200 Sobic007G131200 Sobic008G148400--Sobic007G131200 Sobic009G233800 Sobic009G233800 Sobic008G148400--Sobic009G233800 Sobic006G265400 Sobic006G265400 Sobic008G148400--Sobic006G265400 Sobic001G426400--Sobic006G265400 Sobic001G426400--Sobic008G148400 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic004G249500 Sobic004G249500 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic001G426400--Sobic007G131200 Sobic001G388400 Sobic001G388400 Sobic009G253000--Sobic001G388400 Sobic009G253000--Sobic007G227600 Sobic009G253000--Sobic009G238100 Sobic010G074100 Sobic010G074100 Sobic009G253000--Sobic010G074100 Sobic009G253000--Sobic009G036300 Sobic010G028000 Sobic010G028000 Sobic009G253000--Sobic010G028000 Sobic009G253000--Sobic009G233800 Sobic010G074200 Sobic010G074200 Sobic009G253000--Sobic010G074200 Sobic006G204100 Sobic006G204100 Sobic009G253000--Sobic006G204100 Sobic004G068700 Sobic004G068700 Sobic001G179100--Sobic004G068700 Sobic003G214000 Sobic003G214000 Sobic001G179100--Sobic003G214000 Sobic002G155900 Sobic002G155900 Sobic001G179100--Sobic002G155900 Sobic002G287000 Sobic002G287000 Sobic001G179100--Sobic002G287000 Sobic001G179100--Sobic009G238100 Sobic001G179100--Sobic003G255100 Sobic001G161300 Sobic001G161300 Sobic001G179100--Sobic001G161300 Sobic008G111300 Sobic008G111300 Sobic001G179100--Sobic008G111300 Sobic002G366100 Sobic002G366100 Sobic001G179100--Sobic002G366100 Sobic005G169600--Sobic009G238100 Sobic005G169600--Sobic006G204100 Sobic005G169600--Sobic009G036300 Sobic005G169600--Sobic007G227600 Sobic003G342700 Sobic003G342700 Sobic005G169600--Sobic003G342700 Sobic005G169600--Sobic002G038300 Sobic002G404900 Sobic002G404900 Sobic005G169600--Sobic002G404900 Sobic009G234200 Sobic009G234200 Sobic005G169600--Sobic009G234200 Sobic005G169600--Sobic003G030400 Sobic009G036300--Sobic007G227600 Sobic009G036300--Sobic001G388400 Sobic009G036300--Sobic010G074200 Sobic009G036300--Sobic010G028000 Sobic009G036300--Sobic010G074100 Sobic010G211500 Sobic010G211500 Sobic009G036300--Sobic010G211500 Sobic009G036300--Sobic009G234200 Sobic009G036300--Sobic006G204100 Sobic002G163700 Sobic002G163700 Sobic009G036300--Sobic002G163700 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic003G030400--Sobic004G249500 Sobic007G227600--Sobic010G074100 Sobic007G227600--Sobic009G036300 Sobic007G227600--Sobic001G388400 Sobic007G227600--Sobic009G234200 Sobic007G227600--Sobic010G028000 Sobic007G227600--Sobic010G074200 Sobic007G227600--Sobic009G253000 Sobic007G227600--Sobic010G211500 Sobic007G227600--Sobic002G163700 Sobic002G386400 Sobic002G386400 Sobic002G038300--Sobic002G386400 Sobic002G038300--Sobic001G161300 Sobic002G038300--Sobic002G163700 Sobic002G038300--Sobic001G388400 Sobic002G038300--Sobic009G234200 Sobic009G138900 Sobic009G138900 Sobic002G038300--Sobic009G138900 Sobic003G208300 Sobic003G208300 Sobic002G038300--Sobic003G208300 Sobic001G450600 Sobic001G450600 Sobic002G038300--Sobic001G450600 Sobic002G038300--Sobic010G028000
Octagon: transcription factors


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