Gene annotation
Transcriptome id Sobic.001G426400.1
Synonym MEE59, Sb01g040070
Functional annotation expressed protein
UniProt C5WQ47
Pfam -
Panther DB PTHR34686 PTHR34686:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37300 : maternal effect embryo arrest 59
RAP-DB (Rice) LOC_Os03g15920.1 : expressed protein
MaizeGDB (Corn) Zm00025a001746
Brachypodium KQK22425
Barley HORVU4Hr1G060870.4 , HORVU4Hr1G060870.1 , HORVU4Hr1G060870.3 , HORVU4Hr1G060870.2
Wheat TraesCS4B02G213000 , TraesCS4A02G091700 , TraesCS4D02G213800
Populus -


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cDNA sequences
Sobic.001G426400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
2 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
3 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
4 Sobic.009G032100 nitrogen regulatory protein P-II, putative, expressed -
5 Sobic.004G249500 B-box (BBX) protein(PubMedID : 30626335)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCT/B-box zinc finger protein, putative, expressed -
6 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
8 Sobic.007G060900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed -
9 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.005G169600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.001G141300 RNA recognition motif containing protein, expressed -
12 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
13 Sobic.002G155900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
15 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -
16 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
17 Sobic.010G079700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
18 Sobic.009G085900 aquaporin protein, putative, expressed K09873: aquaporin TIP
19 Sobic.005G145300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBO10 - F-box and other domain containing protein, expressed K12116: flavin-binding kelch repeat F-box protein 1
20 Sobic.009G197000 O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G426400 Sobic001G426400 Sobic006G265400 Sobic006G265400 Sobic001G426400--Sobic006G265400 Sobic008G148400 Sobic008G148400 Sobic001G426400--Sobic008G148400 Sobic009G238100 Sobic009G238100 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic004G249500 Sobic004G249500 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic003G030400 Sobic003G030400 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic007G131200 Sobic007G131200 Sobic001G426400--Sobic007G131200 Sobic006G265400--Sobic001G426400 Sobic006G265400--Sobic008G148400 Sobic006G265400--Sobic009G238100 Sobic006G265400--Sobic007G131200 Sobic006G265400--Sobic007G060900 Sobic001G141300 Sobic001G141300 Sobic006G265400--Sobic001G141300 Sobic009G197000 Sobic009G197000 Sobic006G265400--Sobic009G197000 Sobic001G255400 Sobic001G255400 Sobic006G265400--Sobic001G255400 Sobic010G143400 Sobic010G143400 Sobic006G265400--Sobic010G143400 Sobic008G148400--Sobic009G238100 Sobic008G148400--Sobic001G426400 Sobic008G148400--Sobic003G030400 Sobic003G222600 Sobic003G222600 Sobic008G148400--Sobic003G222600 Sobic001G423100 Sobic001G423100 Sobic008G148400--Sobic001G423100 Sobic009G154600 Sobic009G154600 Sobic008G148400--Sobic009G154600 Sobic008G148400--Sobic007G131200 Sobic009G233800 Sobic009G233800 Sobic008G148400--Sobic009G233800 Sobic008G148400--Sobic006G265400 Sobic009G238100--Sobic008G148400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic001G179100 Sobic001G179100 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic009G032100--Sobic001G426400 Sobic009G032100--Sobic009G238100 Sobic009G032100--Sobic008G148400 Sobic006G186000 Sobic006G186000 Sobic009G032100--Sobic006G186000 Sobic009G032100--Sobic006G265400 Sobic009G032100--Sobic001G423100 Sobic001G367500 Sobic001G367500 Sobic009G032100--Sobic001G367500 Sobic005G145300 Sobic005G145300 Sobic009G032100--Sobic005G145300 Sobic009G032100--Sobic003G030400 Sobic001G076200 Sobic001G076200 Sobic004G249500--Sobic001G076200 Sobic004G249500--Sobic003G030400 Sobic008G101500 Sobic008G101500 Sobic004G249500--Sobic008G101500 Sobic004G249500--Sobic009G238100 Sobic004G249500--Sobic001G426400 Sobic008G177850 Sobic008G177850 Sobic004G249500--Sobic008G177850 Sobic004G246800 Sobic004G246800 Sobic004G249500--Sobic004G246800 Sobic003G114100 Sobic003G114100 Sobic004G249500--Sobic003G114100 Sobic005G009300 Sobic005G009300 Sobic004G249500--Sobic005G009300 Sobic010G079700 Sobic010G079700 Sobic003G255100--Sobic010G079700 Sobic001G093600 Sobic001G093600 Sobic003G255100--Sobic001G093600 Sobic002G155900 Sobic002G155900 Sobic003G255100--Sobic002G155900 Sobic001G005500 Sobic001G005500 Sobic003G255100--Sobic001G005500 Sobic003G255100--Sobic001G179100 Sobic001G030500 Sobic001G030500 Sobic003G255100--Sobic001G030500 Sobic006G269400 Sobic006G269400 Sobic003G255100--Sobic006G269400 Sobic002G287000 Sobic002G287000 Sobic003G255100--Sobic002G287000 Sobic007G191900 Sobic007G191900 Sobic003G255100--Sobic007G191900 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic003G030400--Sobic001G076200 Sobic003G030400--Sobic009G238100 Sobic009G137000 Sobic009G137000 Sobic003G030400--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic003G030400--Sobic001G114400 Sobic004G070200 Sobic004G070200 Sobic003G030400--Sobic004G070200 Sobic003G030400--Sobic004G249500 Sobic007G060900--Sobic006G265400 Sobic007G060900--Sobic001G426400 Sobic001G254400 Sobic001G254400 Sobic007G060900--Sobic001G254400 Sobic007G060900--Sobic004G070200 Sobic004G247800 Sobic004G247800 Sobic007G060900--Sobic004G247800 Sobic007G060900--Sobic009G197000 Sobic002G172600 Sobic002G172600 Sobic007G060900--Sobic002G172600 Sobic007G182600 Sobic007G182600 Sobic007G060900--Sobic007G182600 Sobic010G270900 Sobic010G270900 Sobic007G060900--Sobic010G270900 Sobic007G131200--Sobic010G143400 Sobic007G131200--Sobic008G148400 Sobic007G131200--Sobic004G070200 Sobic007G131200--Sobic003G030400 Sobic007G131200--Sobic009G197000 Sobic007G131200--Sobic003G222600 Sobic007G131200--Sobic006G265400 Sobic007G131200--Sobic001G426400 Sobic003G406700 Sobic003G406700 Sobic007G131200--Sobic003G406700
Octagon: transcription factors


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