Gene annotation
Transcriptome id Sobic.010G079700.1
Synonym Sb10g006910
Functional annotation 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
UniProt C5Z6E6
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF145
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G06620 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os03g48430.1 : 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed
MaizeGDB (Corn) Zm00025a049599 , Zm00025a029121
Brachypodium KQJ95259 , KQK08219 , KQK21761
Barley HORVU2Hr1G005570.1
Wheat TraesCSU02G024200 , TraesCSU02G024200 , TraesCS2B02G066000 , TraesCS2B02G066000 , TraesCS2B02G066000 , TraesCS2B02G076400 , TraesCS7A02G222900 , TraesCS2D02G036900 , TraesCS2A02G051700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G079700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G030500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
3 Sobic.006G269400 expressed protein -
4 Sobic.002G155900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G093600 - -
6 Sobic.002G287000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
7 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
8 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
9 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
10 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.007G191900 ACT domain containing protein, expressed -
12 Sobic.003G107300 light-induced protein 1-like, putative, expressed -
13 Sobic.010G182800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like receptor kinase 1, putative, expressed -
14 Sobic.003G065600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
15 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.001G321600 dehydration response related protein, putative, expressed -
17 Sobic.007G014600 transferase family protein, putative, expressed -
18 Sobic.009G085900 aquaporin protein, putative, expressed K09873: aquaporin TIP
19 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
20 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -


Gene co-expression network
sample Sobic010G079700 Sobic010G079700 Sobic003G255100 Sobic003G255100 Sobic010G079700--Sobic003G255100 Sobic001G030500 Sobic001G030500 Sobic010G079700--Sobic001G030500 Sobic006G269400 Sobic006G269400 Sobic010G079700--Sobic006G269400 Sobic002G155900 Sobic002G155900 Sobic010G079700--Sobic002G155900 Sobic001G093600 Sobic001G093600 Sobic010G079700--Sobic001G093600 Sobic002G287000 Sobic002G287000 Sobic010G079700--Sobic002G287000 Sobic001G179100 Sobic001G179100 Sobic010G079700--Sobic001G179100 Sobic001G005500 Sobic001G005500 Sobic010G079700--Sobic001G005500 Sobic002G271600 Sobic002G271600 Sobic010G079700--Sobic002G271600 Sobic003G255100--Sobic010G079700 Sobic003G255100--Sobic001G093600 Sobic003G255100--Sobic002G155900 Sobic003G255100--Sobic001G005500 Sobic003G255100--Sobic001G179100 Sobic003G255100--Sobic001G030500 Sobic003G255100--Sobic006G269400 Sobic003G255100--Sobic002G287000 Sobic007G191900 Sobic007G191900 Sobic003G255100--Sobic007G191900 Sobic001G030500--Sobic003G255100 Sobic007G014600 Sobic007G014600 Sobic001G030500--Sobic007G014600 Sobic001G030500--Sobic010G079700 Sobic001G030500--Sobic001G179100 Sobic001G030500--Sobic007G191900 Sobic001G030500--Sobic001G005500 Sobic001G030500--Sobic006G269400 Sobic001G121100 Sobic001G121100 Sobic001G030500--Sobic001G121100 Sobic001G030500--Sobic002G271600 Sobic002G195700 Sobic002G195700 Sobic006G269400--Sobic002G195700 Sobic006G269400--Sobic001G005500 Sobic006G269400--Sobic003G255100 Sobic001G275200 Sobic001G275200 Sobic006G269400--Sobic001G275200 Sobic006G269400--Sobic007G191900 Sobic006G269400--Sobic010G079700 Sobic006G273000 Sobic006G273000 Sobic006G269400--Sobic006G273000 Sobic002G366100 Sobic002G366100 Sobic006G269400--Sobic002G366100 Sobic008G073400 Sobic008G073400 Sobic006G269400--Sobic008G073400 Sobic002G155900--Sobic001G179100 Sobic002G155900--Sobic003G255100 Sobic003G214000 Sobic003G214000 Sobic002G155900--Sobic003G214000 Sobic006G152500 Sobic006G152500 Sobic002G155900--Sobic006G152500 Sobic002G155900--Sobic010G079700 Sobic009G085900 Sobic009G085900 Sobic002G155900--Sobic009G085900 Sobic001G410450 Sobic001G410450 Sobic002G155900--Sobic001G410450 Sobic004G217700 Sobic004G217700 Sobic002G155900--Sobic004G217700 Sobic002G155900--Sobic002G287000 Sobic003G107300 Sobic003G107300 Sobic001G093600--Sobic003G107300 Sobic001G093600--Sobic006G273000 Sobic001G093600--Sobic001G005500 Sobic001G093600--Sobic001G275200 Sobic001G093600--Sobic003G255100 Sobic007G179750 Sobic007G179750 Sobic001G093600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic001G093600--Sobic003G284300 Sobic001G093600--Sobic007G191900 Sobic001G321600 Sobic001G321600 Sobic001G093600--Sobic001G321600 Sobic004G068700 Sobic004G068700 Sobic002G287000--Sobic004G068700 Sobic002G287000--Sobic001G179100 Sobic002G287000--Sobic003G255100 Sobic002G287000--Sobic002G366100 Sobic002G287000--Sobic001G321600 Sobic002G287000--Sobic003G214000 Sobic002G287000--Sobic001G005500 Sobic009G238100 Sobic009G238100 Sobic002G287000--Sobic009G238100 Sobic002G287000--Sobic002G195700 Sobic001G179100--Sobic004G068700 Sobic001G179100--Sobic003G214000 Sobic001G179100--Sobic002G155900 Sobic001G179100--Sobic002G287000 Sobic001G179100--Sobic009G238100 Sobic001G179100--Sobic003G255100 Sobic001G161300 Sobic001G161300 Sobic001G179100--Sobic001G161300 Sobic008G111300 Sobic008G111300 Sobic001G179100--Sobic008G111300 Sobic001G179100--Sobic002G366100 Sobic001G005500--Sobic001G321600 Sobic001G005500--Sobic002G195700 Sobic001G019300 Sobic001G019300 Sobic001G005500--Sobic001G019300 Sobic001G005500--Sobic001G093600 Sobic001G005500--Sobic002G366100 Sobic001G005500--Sobic008G073400 Sobic001G005500--Sobic006G269400 Sobic001G005500--Sobic006G273000 Sobic001G005500--Sobic007G191900 Sobic002G271600--Sobic007G014600 Sobic002G209100 Sobic002G209100 Sobic002G271600--Sobic002G209100 Sobic002G041800 Sobic002G041800 Sobic002G271600--Sobic002G041800 Sobic002G271600--Sobic004G217700 Sobic001G145050 Sobic001G145050 Sobic002G271600--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic002G271600--Sobic009G205600 Sobic006G053700 Sobic006G053700 Sobic002G271600--Sobic006G053700 Sobic004G195800 Sobic004G195800 Sobic002G271600--Sobic004G195800 Sobic002G271600--Sobic002G366100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.