Gene annotation
Transcriptome id Sobic.002G195700.1
Synonym ELI3-1, CAD7, SbCAD8-1;SbCAD8-1, Sb02g024220, ATCAD7, ELI3
Functional annotation Cinnamyl alcohol dehydrogenase (PubMedID : 28606901)
Cinnamyl alcohol dehydrogenase (PubMedID : 19087955)
dehydrogenase, putative, expressed
UniProt A0A1W0W560
Pfam PF00107 PF08240
Panther DB PTHR11695 PTHR11695:SF599
NCBI CDD KOG0023; Alcohol dehydrogenase, class V
KEGG Orthology K00083; cinnamyl-alcohol dehydrogenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT4G39330 : cinnamyl alcohol dehydrogenase 9
RAP-DB (Rice) LOC_Os09g23540.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a046898 , Zm00025a012285 , Zm00025a046897 , Zm00025a046899
Brachypodium KQJ95583 , KQJ90155 , KQJ90154 , KQJ90153 , PNT64522 , PNT64524 , PNT64523
Barley HORVU5Hr1G062030.14 , HORVU5Hr1G062030.15 , HORVU5Hr1G062030.16 , HORVU5Hr1G062030.10 , HORVU5Hr1G062030.11 , HORVU5Hr1G062030.12 , HORVU5Hr1G062030.13 , HORVU6Hr1G032760.1 , HORVU6Hr1G032760.2 , HORVU6Hr1G032760.3 , HORVU0Hr1G012860.5 , HORVU0Hr1G012860.4 , HORVU0Hr1G012860.3 , HORVU0Hr1G012860.2 , HORVU0Hr1G012860.1 , HORVU5Hr1G062030.8 , HORVU5Hr1G062030.9 , HORVU5Hr1G062030.6 , HORVU5Hr1G062030.7 , HORVU5Hr1G062030.4 , HORVU5Hr1G062030.5 , HORVU5Hr1G062030.2 , HORVU5Hr1G062030.1 , HORVU0Hr1G012940.8 , HORVU0Hr1G012940.1 , HORVU0Hr1G012940.2 , HORVU0Hr1G012940.3 , HORVU0Hr1G012940.4 , HORVU0Hr1G012940.5 , HORVU0Hr1G012940.6 , HORVU0Hr1G012940.7 , HORVU2Hr1G010830.1 , HORVU2Hr1G010830.2 , HORVU2Hr1G010830.3 , HORVU2Hr1G010830.4 , HORVU2Hr1G010830.6 , HORVU2Hr1G010830.7 , HORVU5Hr1G062030.3 , HORVU2Hr1G010840.1
Wheat TraesCS5A02G205700 , TraesCS2D02G069800 , TraesCS5D02G210700 , TraesCS7B02G232400 , TraesCS5D02G210600 , TraesCS5A02G213900 , TraesCS5A02G213900 , TraesCS5A02G213900 , TraesCS5D02G218100 , TraesCS5D02G218100 , TraesCS7D02G328300 , TraesCS7A02G183000 , TraesCS7A02G350500 , TraesCS5A02G205600 , TraesCS7D02G376600 , TraesCS7B02G282100 , TraesCS5B02G209800 , TraesCS5B02G209800 , TraesCS5B02G209800 , TraesCS5B02G202800 , TraesCS7D02G328300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G195700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
2 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
3 Sobic.001G321600 dehydration response related protein, putative, expressed -
4 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
5 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
7 Sobic.005G021600 expressed protein -
8 Sobic.006G269400 expressed protein -
9 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
12 Sobic.010G089200 expressed protein -
13 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
14 Sobic.003G106500 expressed protein -
15 Sobic.001G525900 homeobox domain containing protein, expressed -
16 Sobic.001G145050 - -
17 Sobic.007G191900 ACT domain containing protein, expressed -
18 Sobic.004G270400 amino acid permease family protein, putative, expressed -
19 Sobic.001G275200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.003G291400 dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic002G195700 Sobic002G195700 Sobic001G005500 Sobic001G005500 Sobic002G195700--Sobic001G005500 Sobic008G073400 Sobic008G073400 Sobic002G195700--Sobic008G073400 Sobic001G321600 Sobic001G321600 Sobic002G195700--Sobic001G321600 Sobic001G019300 Sobic001G019300 Sobic002G195700--Sobic001G019300 Sobic002G366100 Sobic002G366100 Sobic002G195700--Sobic002G366100 Sobic002G281000 Sobic002G281000 Sobic002G195700--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic002G195700--Sobic005G021600 Sobic006G269400 Sobic006G269400 Sobic002G195700--Sobic006G269400 Sobic001G198700 Sobic001G198700 Sobic002G195700--Sobic001G198700 Sobic001G005500--Sobic001G321600 Sobic001G005500--Sobic002G195700 Sobic001G005500--Sobic001G019300 Sobic001G093600 Sobic001G093600 Sobic001G005500--Sobic001G093600 Sobic001G005500--Sobic002G366100 Sobic001G005500--Sobic008G073400 Sobic001G005500--Sobic006G269400 Sobic006G273000 Sobic006G273000 Sobic001G005500--Sobic006G273000 Sobic007G191900 Sobic007G191900 Sobic001G005500--Sobic007G191900 Sobic008G073400--Sobic002G195700 Sobic008G073400--Sobic001G019300 Sobic003G106500 Sobic003G106500 Sobic008G073400--Sobic003G106500 Sobic008G073400--Sobic001G321600 Sobic008G073400--Sobic001G005500 Sobic008G073400--Sobic002G281000 Sobic008G073400--Sobic005G021600 Sobic008G073400--Sobic001G198700 Sobic005G089000 Sobic005G089000 Sobic008G073400--Sobic005G089000 Sobic001G321600--Sobic001G005500 Sobic001G321600--Sobic001G019300 Sobic001G321600--Sobic002G195700 Sobic010G089200 Sobic010G089200 Sobic001G321600--Sobic010G089200 Sobic001G321600--Sobic008G073400 Sobic001G520100 Sobic001G520100 Sobic001G321600--Sobic001G520100 Sobic001G321600--Sobic002G281000 Sobic003G237000 Sobic003G237000 Sobic001G321600--Sobic003G237000 Sobic001G321600--Sobic002G366100 Sobic002G265400 Sobic002G265400 Sobic001G019300--Sobic002G265400 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G019300--Sobic001G321600 Sobic001G019300--Sobic001G005500 Sobic001G019300--Sobic008G073400 Sobic001G019300--Sobic002G195700 Sobic005G190900 Sobic005G190900 Sobic001G019300--Sobic005G190900 Sobic001G019300--Sobic001G198700 Sobic002G366100--Sobic002G195700 Sobic001G145050 Sobic001G145050 Sobic002G366100--Sobic001G145050 Sobic002G366100--Sobic001G005500 Sobic009G255100 Sobic009G255100 Sobic002G366100--Sobic009G255100 Sobic006G060800 Sobic006G060800 Sobic002G366100--Sobic006G060800 Sobic002G366100--Sobic001G321600 Sobic002G366100--Sobic005G021600 Sobic004G068700 Sobic004G068700 Sobic002G366100--Sobic004G068700 Sobic001G404500 Sobic001G404500 Sobic002G366100--Sobic001G404500 Sobic001G525900 Sobic001G525900 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic008G063100 Sobic008G063100 Sobic002G281000--Sobic008G063100 Sobic009G202400 Sobic009G202400 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic004G063200 Sobic004G063200 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic005G021600--Sobic008G063100 Sobic010G265500 Sobic010G265500 Sobic005G021600--Sobic010G265500 Sobic009G028400 Sobic009G028400 Sobic005G021600--Sobic009G028400 Sobic005G021600--Sobic002G195700 Sobic007G178500 Sobic007G178500 Sobic005G021600--Sobic007G178500 Sobic010G218600 Sobic010G218600 Sobic005G021600--Sobic010G218600 Sobic005G021600--Sobic002G281000 Sobic007G132500 Sobic007G132500 Sobic005G021600--Sobic007G132500 Sobic001G006000 Sobic001G006000 Sobic005G021600--Sobic001G006000 Sobic006G269400--Sobic002G195700 Sobic006G269400--Sobic001G005500 Sobic003G255100 Sobic003G255100 Sobic006G269400--Sobic003G255100 Sobic001G275200 Sobic001G275200 Sobic006G269400--Sobic001G275200 Sobic006G269400--Sobic007G191900 Sobic010G079700 Sobic010G079700 Sobic006G269400--Sobic010G079700 Sobic006G269400--Sobic006G273000 Sobic006G269400--Sobic002G366100 Sobic006G269400--Sobic008G073400 Sobic001G198700--Sobic003G106500 Sobic001G198700--Sobic001G019300 Sobic001G198700--Sobic002G265400 Sobic001G198700--Sobic002G195700 Sobic001G198700--Sobic008G063100 Sobic001G198700--Sobic004G063200 Sobic005G093300 Sobic005G093300 Sobic001G198700--Sobic005G093300 Sobic002G371900 Sobic002G371900 Sobic001G198700--Sobic002G371900 Sobic004G078600 Sobic004G078600 Sobic001G198700--Sobic004G078600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.