Gene annotation
Transcriptome id Sobic.008G073400.1
Synonym SbBBX16, Sb08g006510, B-box (BBX) protein, LZF1, SbBBX16;B-box (BBX) protein, STH3, DBB3
Functional annotation B-box (BBX) protein (PubMedID : 30626335)
down-regulated TF in developmental senescence (PubMedID : 27586543)
B-box zinc finger family protein, putative, expressed
UniProt C5YTM3
Pfam PF00643
Panther DB PTHR31832 PTHR31832:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT1G78600 : light-regulated zinc finger protein 1
RAP-DB (Rice) LOC_Os12g10660.1 : B-box zinc finger family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91873
Barley HORVU6Hr1G028150.2 , HORVU6Hr1G028150.7
Wheat TraesCS6A02G143900 , TraesCS6B02G172300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
2 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
3 Sobic.003G106500 expressed protein -
4 Sobic.001G321600 dehydration response related protein, putative, expressed -
5 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
6 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
7 Sobic.005G021600 expressed protein -
8 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.010G089200 expressed protein -
11 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
12 Sobic.001G520100 MLO domain containing protein, putative, expressed K08472: mlo protein
13 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
14 Sobic.001G093600 - -
15 Sobic.006G269400 expressed protein -
16 Sobic.005G190900 MBTB64 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
18 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
19 Sobic.007G178500 cytochrome P450, putative, expressed -
20 Sobic.001G525900 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic008G073400 Sobic008G073400 Sobic002G195700 Sobic002G195700 Sobic008G073400--Sobic002G195700 Sobic001G019300 Sobic001G019300 Sobic008G073400--Sobic001G019300 Sobic003G106500 Sobic003G106500 Sobic008G073400--Sobic003G106500 Sobic001G321600 Sobic001G321600 Sobic008G073400--Sobic001G321600 Sobic001G005500 Sobic001G005500 Sobic008G073400--Sobic001G005500 Sobic002G281000 Sobic002G281000 Sobic008G073400--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic008G073400--Sobic005G021600 Sobic001G198700 Sobic001G198700 Sobic008G073400--Sobic001G198700 Sobic005G089000 Sobic005G089000 Sobic008G073400--Sobic005G089000 Sobic002G195700--Sobic001G005500 Sobic002G195700--Sobic008G073400 Sobic002G195700--Sobic001G321600 Sobic002G195700--Sobic001G019300 Sobic002G366100 Sobic002G366100 Sobic002G195700--Sobic002G366100 Sobic002G195700--Sobic002G281000 Sobic002G195700--Sobic005G021600 Sobic006G269400 Sobic006G269400 Sobic002G195700--Sobic006G269400 Sobic002G195700--Sobic001G198700 Sobic002G265400 Sobic002G265400 Sobic001G019300--Sobic002G265400 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G019300--Sobic001G321600 Sobic001G019300--Sobic001G005500 Sobic001G019300--Sobic008G073400 Sobic001G019300--Sobic002G195700 Sobic005G190900 Sobic005G190900 Sobic001G019300--Sobic005G190900 Sobic001G019300--Sobic001G198700 Sobic003G106500--Sobic001G198700 Sobic003G106500--Sobic008G073400 Sobic002G001800 Sobic002G001800 Sobic003G106500--Sobic002G001800 Sobic002G371900 Sobic002G371900 Sobic003G106500--Sobic002G371900 Sobic003G106500--Sobic001G019300 Sobic003G106500--Sobic005G190900 Sobic003G106500--Sobic002G281000 Sobic005G192600 Sobic005G192600 Sobic003G106500--Sobic005G192600 Sobic003G106500--Sobic002G195700 Sobic001G321600--Sobic001G005500 Sobic001G321600--Sobic001G019300 Sobic001G321600--Sobic002G195700 Sobic010G089200 Sobic010G089200 Sobic001G321600--Sobic010G089200 Sobic001G321600--Sobic008G073400 Sobic001G520100 Sobic001G520100 Sobic001G321600--Sobic001G520100 Sobic001G321600--Sobic002G281000 Sobic003G237000 Sobic003G237000 Sobic001G321600--Sobic003G237000 Sobic001G321600--Sobic002G366100 Sobic001G005500--Sobic001G321600 Sobic001G005500--Sobic002G195700 Sobic001G005500--Sobic001G019300 Sobic001G093600 Sobic001G093600 Sobic001G005500--Sobic001G093600 Sobic001G005500--Sobic002G366100 Sobic001G005500--Sobic008G073400 Sobic001G005500--Sobic006G269400 Sobic006G273000 Sobic006G273000 Sobic001G005500--Sobic006G273000 Sobic007G191900 Sobic007G191900 Sobic001G005500--Sobic007G191900 Sobic001G525900 Sobic001G525900 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic008G063100 Sobic008G063100 Sobic002G281000--Sobic008G063100 Sobic009G202400 Sobic009G202400 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic004G063200 Sobic004G063200 Sobic002G281000--Sobic004G063200 Sobic001G404500 Sobic001G404500 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic005G021600--Sobic008G063100 Sobic010G265500 Sobic010G265500 Sobic005G021600--Sobic010G265500 Sobic009G028400 Sobic009G028400 Sobic005G021600--Sobic009G028400 Sobic005G021600--Sobic002G195700 Sobic007G178500 Sobic007G178500 Sobic005G021600--Sobic007G178500 Sobic010G218600 Sobic010G218600 Sobic005G021600--Sobic010G218600 Sobic005G021600--Sobic002G281000 Sobic007G132500 Sobic007G132500 Sobic005G021600--Sobic007G132500 Sobic001G006000 Sobic001G006000 Sobic005G021600--Sobic001G006000 Sobic001G198700--Sobic003G106500 Sobic001G198700--Sobic001G019300 Sobic001G198700--Sobic002G265400 Sobic001G198700--Sobic002G195700 Sobic001G198700--Sobic008G063100 Sobic001G198700--Sobic004G063200 Sobic005G093300 Sobic005G093300 Sobic001G198700--Sobic005G093300 Sobic001G198700--Sobic002G371900 Sobic004G078600 Sobic004G078600 Sobic001G198700--Sobic004G078600 Sobic005G089000--Sobic002G195700 Sobic005G089000--Sobic001G321600 Sobic005G089000--Sobic008G073400 Sobic005G089000--Sobic001G019300 Sobic005G089000--Sobic001G005500 Sobic003G135800 Sobic003G135800 Sobic005G089000--Sobic003G135800 Sobic003G291400 Sobic003G291400 Sobic005G089000--Sobic003G291400 Sobic005G089000--Sobic003G106500 Sobic001G452700 Sobic001G452700 Sobic005G089000--Sobic001G452700
Octagon: transcription factors


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