Gene annotation
Transcriptome id Sobic.001G407900.2
Synonym Sb01g038530
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
phospholipase C, putative, expressed
UniProt C5WNJ9
Pfam PF00581
Panther DB PTHR12231 PTHR12231:SF111
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G08920 : Rhodanese/Cell cycle control phosphatase superfamily protein
RAP-DB (Rice) LOC_Os03g18020.1 : rhodanese-like family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001979
Brachypodium KQK22174
Barley HORVU4Hr1G056550.24 , HORVU4Hr1G056550.22 , HORVU4Hr1G056550.23 , HORVU4Hr1G056550.21 , HORVU4Hr1G056550.25 , HORVU4Hr1G056550.9
Wheat TraesCS4A02G109100
Populus -


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cDNA sequences
Sobic.001G407900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
2 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
3 Sobic.001G498300 galactose mutarotase-like, putative, expressed -
4 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
5 Sobic.010G218600 inactive receptor kinase At2g26730 precursor, putative, expressed -
6 Sobic.008G117400 OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.001G042301 - -
8 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
9 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
10 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
11 Sobic.007G178500 cytochrome P450, putative, expressed -
12 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
13 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
14 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
15 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
16 Sobic.002G383400 Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed -
17 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
18 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
19 Sobic.004G068300 inorganic H+ pyrophosphatase, putative, expressed K01507: inorganic pyrophosphatase
20 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17


Gene co-expression network
sample Sobic001G407900 Sobic001G407900 Sobic007G023300 Sobic007G023300 Sobic001G407900--Sobic007G023300 Sobic001G339100 Sobic001G339100 Sobic001G407900--Sobic001G339100 Sobic001G498300 Sobic001G498300 Sobic001G407900--Sobic001G498300 Sobic001G206200 Sobic001G206200 Sobic001G407900--Sobic001G206200 Sobic010G218600 Sobic010G218600 Sobic001G407900--Sobic010G218600 Sobic008G117400 Sobic008G117400 Sobic001G407900--Sobic008G117400 Sobic001G042301 Sobic001G042301 Sobic001G407900--Sobic001G042301 Sobic002G242000 Sobic002G242000 Sobic001G407900--Sobic002G242000 Sobic004G193400 Sobic004G193400 Sobic001G407900--Sobic004G193400 Sobic007G023300--Sobic004G193400 Sobic002G414400 Sobic002G414400 Sobic007G023300--Sobic002G414400 Sobic007G023300--Sobic001G407900 Sobic008G063500 Sobic008G063500 Sobic007G023300--Sobic008G063500 Sobic007G023300--Sobic001G206200 Sobic002G338000 Sobic002G338000 Sobic007G023300--Sobic002G338000 Sobic007G023300--Sobic001G339100 Sobic007G178500 Sobic007G178500 Sobic007G023300--Sobic007G178500 Sobic002G030200 Sobic002G030200 Sobic007G023300--Sobic002G030200 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic001G339100--Sobic007G023300 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic001G339100--Sobic007G178500 Sobic005G021600 Sobic005G021600 Sobic001G339100--Sobic005G021600 Sobic001G339100--Sobic008G063500 Sobic003G221700 Sobic003G221700 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic001G498300--Sobic010G218600 Sobic003G187000 Sobic003G187000 Sobic001G498300--Sobic003G187000 Sobic001G498300--Sobic007G178500 Sobic001G498300--Sobic001G407900 Sobic001G498300--Sobic008G063500 Sobic004G343100 Sobic004G343100 Sobic001G498300--Sobic004G343100 Sobic001G498300--Sobic005G021600 Sobic005G192600 Sobic005G192600 Sobic001G498300--Sobic005G192600 Sobic004G314800 Sobic004G314800 Sobic001G498300--Sobic004G314800 Sobic001G206200--Sobic002G338000 Sobic003G055300 Sobic003G055300 Sobic001G206200--Sobic003G055300 Sobic010G000500 Sobic010G000500 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic004G234200 Sobic004G234200 Sobic001G206200--Sobic004G234200 Sobic001G046900 Sobic001G046900 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic010G218600--Sobic001G498300 Sobic010G218600--Sobic005G021600 Sobic010G265500 Sobic010G265500 Sobic010G218600--Sobic010G265500 Sobic010G218600--Sobic007G178500 Sobic010G218600--Sobic008G063500 Sobic010G218600--Sobic001G407900 Sobic001G447700 Sobic001G447700 Sobic010G218600--Sobic001G447700 Sobic010G218600--Sobic007G023300 Sobic010G218600--Sobic005G192600 Sobic008G117400--Sobic004G234200 Sobic008G117400--Sobic004G193400 Sobic008G117400--Sobic002G030200 Sobic008G117400--Sobic001G206200 Sobic002G297300 Sobic002G297300 Sobic008G117400--Sobic002G297300 Sobic008G117400--Sobic008G063500 Sobic008G117400--Sobic002G338000 Sobic008G117400--Sobic002G414400 Sobic008G117400--Sobic010G000500 Sobic001G042301--Sobic001G206200 Sobic001G042301--Sobic007G023300 Sobic001G042301--Sobic001G407900 Sobic001G042301--Sobic004G193400 Sobic001G042301--Sobic004G234200 Sobic001G042301--Sobic008G117400 Sobic001G042301--Sobic002G414400 Sobic001G065500 Sobic001G065500 Sobic001G042301--Sobic001G065500 Sobic001G042301--Sobic002G338000 Sobic004G056900 Sobic004G056900 Sobic002G242000--Sobic004G056900 Sobic001G177000 Sobic001G177000 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic002G242000--Sobic001G070500 Sobic007G136900 Sobic007G136900 Sobic002G242000--Sobic007G136900 Sobic002G242000--Sobic002G030200 Sobic002G033900 Sobic002G033900 Sobic002G242000--Sobic002G033900 Sobic010G241000 Sobic010G241000 Sobic002G242000--Sobic010G241000 Sobic002G242000--Sobic008G063500 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic004G193400--Sobic002G297300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200
Octagon: transcription factors


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