Gene annotation
Transcriptome id Sobic.001G042301.1
Synonym -
Functional annotation -
UniProt A0A1B6QH89
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
2 Sobic.007G023300 photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed K02723: photosystem II PsbY protein
3 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
4 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
5 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
6 Sobic.008G117400 OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
7 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
8 Sobic.001G065500 ZOS3-19 - C2H2 zinc finger protein, expressed -
9 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
10 Sobic.006G100900 cytokinin-O-glucosyltransferase 2, putative, expressed -
11 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
12 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
13 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
14 Sobic.004G238500 Geranylgeranyl reductase (Os)(PubMedID : 27208977)@FAD binding domain containing protein, expressed K10960: chlP, geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase
15 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
16 Sobic.006G211701 - -
17 Sobic.003G300500 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
18 Sobic.002G328900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.002G383400 Protein oxidoreductase (Os)(PubMedID : 27208977)@amine oxidase family protein, putative, expressed -
20 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic001G042301 Sobic001G042301 Sobic001G206200 Sobic001G206200 Sobic001G042301--Sobic001G206200 Sobic007G023300 Sobic007G023300 Sobic001G042301--Sobic007G023300 Sobic001G407900 Sobic001G407900 Sobic001G042301--Sobic001G407900 Sobic004G193400 Sobic004G193400 Sobic001G042301--Sobic004G193400 Sobic004G234200 Sobic004G234200 Sobic001G042301--Sobic004G234200 Sobic008G117400 Sobic008G117400 Sobic001G042301--Sobic008G117400 Sobic002G414400 Sobic002G414400 Sobic001G042301--Sobic002G414400 Sobic001G065500 Sobic001G065500 Sobic001G042301--Sobic001G065500 Sobic002G338000 Sobic002G338000 Sobic001G042301--Sobic002G338000 Sobic001G206200--Sobic002G338000 Sobic003G055300 Sobic003G055300 Sobic001G206200--Sobic003G055300 Sobic010G000500 Sobic010G000500 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic002G030200 Sobic002G030200 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G046900 Sobic001G046900 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic007G023300--Sobic004G193400 Sobic007G023300--Sobic002G414400 Sobic007G023300--Sobic001G407900 Sobic008G063500 Sobic008G063500 Sobic007G023300--Sobic008G063500 Sobic007G023300--Sobic001G206200 Sobic007G023300--Sobic002G338000 Sobic001G339100 Sobic001G339100 Sobic007G023300--Sobic001G339100 Sobic007G178500 Sobic007G178500 Sobic007G023300--Sobic007G178500 Sobic007G023300--Sobic002G030200 Sobic001G407900--Sobic007G023300 Sobic001G407900--Sobic001G339100 Sobic001G498300 Sobic001G498300 Sobic001G407900--Sobic001G498300 Sobic001G407900--Sobic001G206200 Sobic010G218600 Sobic010G218600 Sobic001G407900--Sobic010G218600 Sobic001G407900--Sobic008G117400 Sobic001G407900--Sobic001G042301 Sobic002G242000 Sobic002G242000 Sobic001G407900--Sobic002G242000 Sobic001G407900--Sobic004G193400 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic002G297300 Sobic002G297300 Sobic004G193400--Sobic002G297300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic004G234200--Sobic010G000500 Sobic004G114800 Sobic004G114800 Sobic004G234200--Sobic004G114800 Sobic008G117400--Sobic004G234200 Sobic008G117400--Sobic004G193400 Sobic008G117400--Sobic002G030200 Sobic008G117400--Sobic001G206200 Sobic008G117400--Sobic002G297300 Sobic008G117400--Sobic008G063500 Sobic008G117400--Sobic002G338000 Sobic008G117400--Sobic002G414400 Sobic008G117400--Sobic010G000500 Sobic002G414400--Sobic002G338000 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic002G414400--Sobic003G055300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300 Sobic003G328200 Sobic003G328200 Sobic001G065500--Sobic003G328200 Sobic006G280050 Sobic006G280050 Sobic001G065500--Sobic006G280050 Sobic004G314800 Sobic004G314800 Sobic001G065500--Sobic004G314800 Sobic001G191000 Sobic001G191000 Sobic001G065500--Sobic001G191000 Sobic009G028400 Sobic009G028400 Sobic001G065500--Sobic009G028400 Sobic010G265500 Sobic010G265500 Sobic001G065500--Sobic010G265500 Sobic006G107600 Sobic006G107600 Sobic001G065500--Sobic006G107600 Sobic003G187000 Sobic003G187000 Sobic001G065500--Sobic003G187000 Sobic001G240000 Sobic001G240000 Sobic001G065500--Sobic001G240000 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600
Octagon: transcription factors


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