Gene annotation
Transcriptome id Sobic.003G300500.1
Synonym Sb03g034970
Functional annotation oxidoreductase, aldo/keto reductase family protein, putative, expressed
UniProt A0A1B6Q659
Pfam PF00248
Panther DB PTHR11732 PTHR11732:SF253
NCBI CDD KOG1575; Voltage-gated shaker-like K+ channel, subunit beta/KCNAB
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G60690 : NAD(P)-linked oxidoreductase superfamily protein
RAP-DB (Rice) LOC_Os01g43090.1 : oxidoreductase, aldo/keto reductase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a028397
Brachypodium KQK08750
Barley HORVU3Hr1G054640.4 , HORVU3Hr1G054640.5 , HORVU3Hr1G054640.2 , HORVU3Hr1G054640.3 , HORVU3Hr1G054640.1
Wheat TraesCS5D02G336900 , TraesCS7D02G186400 , TraesCS7D02G186400 , TraesCS7A02G184900 , TraesCS3A02G222900 , TraesCS7B02G090000 , TraesCS3D02G230600 , TraesCS3B02G252400 , TraesCS7B02G089600 , TraesCS5A02G331200 , TraesCS7A02G185000 , TraesCS7B02G089800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G328900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.002G351000 fasciclin domain containing protein, expressed -
3 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
4 Sobic.004G317900 expressed protein -
5 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
6 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
7 Sobic.004G114800 expressed protein -
8 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6
9 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
10 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
11 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
12 Sobic.004G076000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein peroxiredoxin-5 (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed -
13 Sobic.008G112300 -(PubMedID : 29017446)@-(PubMedID : 26976818)@citrate transporter, putative, expressed -
14 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
15 Sobic.009G091800 -(PubMedID : 29017446)@PTAC16, putative, expressed -
16 Sobic.001G527100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
17 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
18 Sobic.002G141100 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
20 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G300500 Sobic003G300500 Sobic002G328900 Sobic002G328900 Sobic003G300500--Sobic002G328900 Sobic002G351000 Sobic002G351000 Sobic003G300500--Sobic002G351000 Sobic003G328200 Sobic003G328200 Sobic003G300500--Sobic003G328200 Sobic004G317900 Sobic004G317900 Sobic003G300500--Sobic004G317900 Sobic004G193400 Sobic004G193400 Sobic003G300500--Sobic004G193400 Sobic004G234200 Sobic004G234200 Sobic003G300500--Sobic004G234200 Sobic004G114800 Sobic004G114800 Sobic003G300500--Sobic004G114800 Sobic001G017000 Sobic001G017000 Sobic003G300500--Sobic001G017000 Sobic003G295800 Sobic003G295800 Sobic003G300500--Sobic003G295800 Sobic002G328900--Sobic004G114800 Sobic002G328900--Sobic003G300500 Sobic002G328900--Sobic004G193400 Sobic004G105800 Sobic004G105800 Sobic002G328900--Sobic004G105800 Sobic002G328900--Sobic004G234200 Sobic002G328900--Sobic001G017000 Sobic008G112300 Sobic008G112300 Sobic002G328900--Sobic008G112300 Sobic002G328900--Sobic004G317900 Sobic006G100900 Sobic006G100900 Sobic002G328900--Sobic006G100900 Sobic005G110436 Sobic005G110436 Sobic002G351000--Sobic005G110436 Sobic002G141100 Sobic002G141100 Sobic002G351000--Sobic002G141100 Sobic009G119400 Sobic009G119400 Sobic002G351000--Sobic009G119400 Sobic004G076000 Sobic004G076000 Sobic002G351000--Sobic004G076000 Sobic002G351000--Sobic003G300500 Sobic001G003600 Sobic001G003600 Sobic002G351000--Sobic001G003600 Sobic002G351000--Sobic001G017000 Sobic008G123600 Sobic008G123600 Sobic002G351000--Sobic008G123600 Sobic009G115050 Sobic009G115050 Sobic002G351000--Sobic009G115050 Sobic001G527100 Sobic001G527100 Sobic003G328200--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic003G328200--Sobic001G040000 Sobic003G328200--Sobic004G317900 Sobic003G246400 Sobic003G246400 Sobic003G328200--Sobic003G246400 Sobic001G240000 Sobic001G240000 Sobic003G328200--Sobic001G240000 Sobic003G328200--Sobic003G295800 Sobic004G116100 Sobic004G116100 Sobic003G328200--Sobic004G116100 Sobic004G311100 Sobic004G311100 Sobic003G328200--Sobic004G311100 Sobic003G386300 Sobic003G386300 Sobic003G328200--Sobic003G386300 Sobic004G317900--Sobic003G246400 Sobic007G185100 Sobic007G185100 Sobic004G317900--Sobic007G185100 Sobic004G317900--Sobic003G295800 Sobic010G233800 Sobic010G233800 Sobic004G317900--Sobic010G233800 Sobic001G027600 Sobic001G027600 Sobic004G317900--Sobic001G027600 Sobic001G453300 Sobic001G453300 Sobic004G317900--Sobic001G453300 Sobic004G317900--Sobic003G328200 Sobic004G317900--Sobic001G017000 Sobic004G054500 Sobic004G054500 Sobic004G317900--Sobic004G054500 Sobic004G193400--Sobic004G234200 Sobic002G414400 Sobic002G414400 Sobic004G193400--Sobic002G414400 Sobic002G297300 Sobic002G297300 Sobic004G193400--Sobic002G297300 Sobic007G023300 Sobic007G023300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic008G117400 Sobic008G117400 Sobic004G193400--Sobic008G117400 Sobic002G030200 Sobic002G030200 Sobic004G193400--Sobic002G030200 Sobic004G234200--Sobic009G091800 Sobic004G234200--Sobic010G022100 Sobic004G234200--Sobic002G297300 Sobic004G234200--Sobic004G193400 Sobic004G234200--Sobic002G288300 Sobic008G051000 Sobic008G051000 Sobic004G234200--Sobic008G051000 Sobic004G234200--Sobic002G414400 Sobic010G000500 Sobic010G000500 Sobic004G234200--Sobic010G000500 Sobic004G234200--Sobic004G114800 Sobic001G203000 Sobic001G203000 Sobic004G114800--Sobic001G203000 Sobic004G114800--Sobic004G234200 Sobic004G114800--Sobic006G100900 Sobic004G114800--Sobic008G051000 Sobic004G114800--Sobic009G091800 Sobic007G116950 Sobic007G116950 Sobic004G114800--Sobic007G116950 Sobic001G382100 Sobic001G382100 Sobic004G114800--Sobic001G382100 Sobic004G114800--Sobic002G328900 Sobic004G238500 Sobic004G238500 Sobic004G114800--Sobic004G238500 Sobic001G017000--Sobic003G295800 Sobic001G017000--Sobic004G076000 Sobic001G017000--Sobic004G317900 Sobic001G323801 Sobic001G323801 Sobic001G017000--Sobic001G323801 Sobic001G017000--Sobic001G027600 Sobic006G280050 Sobic006G280050 Sobic001G017000--Sobic006G280050 Sobic001G017000--Sobic003G246400 Sobic001G017000--Sobic003G328200 Sobic004G191200 Sobic004G191200 Sobic001G017000--Sobic004G191200 Sobic007G013400 Sobic007G013400 Sobic003G295800--Sobic007G013400 Sobic009G001500 Sobic009G001500 Sobic003G295800--Sobic009G001500 Sobic003G295800--Sobic001G040000 Sobic003G295800--Sobic004G317900 Sobic009G098100 Sobic009G098100 Sobic003G295800--Sobic009G098100 Sobic003G295800--Sobic001G017000 Sobic003G295800--Sobic001G027600 Sobic003G295800--Sobic001G453300 Sobic003G383500 Sobic003G383500 Sobic003G295800--Sobic003G383500
Octagon: transcription factors


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