Gene annotation
Transcriptome id Sobic.007G023300.1
Synonym Sb07g002060, YCF32, PSBY
Functional annotation photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed
UniProt C5YMH8
Pfam PF06298
Panther DB PTHR34790 PTHR34790:SF1
NCBI CDD -
KEGG Orthology K02723; photosystem II PsbY protein
Gene Ontology GO:0016021; integral component of membrane GO:0015979photosynthesis GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR AT1G67740 : photosystem II BY
RAP-DB (Rice) LOC_Os08g02630.1 : photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a040318 , Zm00025a030219
Brachypodium KQJ94904
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G023300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G193400 photosystem II 5 kDa protein, chloroplast precursor, putative, expressed -
2 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
3 Sobic.001G407900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
4 Sobic.008G063500 Photosystem I reaction center subunit N(PubMedID : 26186930)@photosystem I reaction center subunit N, chloroplast precursor, putative, expressed K02701: photosystem I subunit PsaN
5 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
6 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
7 Sobic.001G339100 glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
8 Sobic.007G178500 cytochrome P450, putative, expressed -
9 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
10 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
11 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
12 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
13 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
14 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
15 Sobic.002G288300 Chorophyll a/b binding protein 1(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
16 Sobic.010G022100 magnesium-protoporphyrin O-methyltransferase, putative, expressed K03428: bchM, magnesium-protoporphyrin O-methyltransferase
17 Sobic.008G117400 OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
19 Sobic.004G234200 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed K01802: peptidylprolyl isomerase
20 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II


Gene co-expression network
sample Sobic007G023300 Sobic007G023300 Sobic004G193400 Sobic004G193400 Sobic007G023300--Sobic004G193400 Sobic002G414400 Sobic002G414400 Sobic007G023300--Sobic002G414400 Sobic001G407900 Sobic001G407900 Sobic007G023300--Sobic001G407900 Sobic008G063500 Sobic008G063500 Sobic007G023300--Sobic008G063500 Sobic001G206200 Sobic001G206200 Sobic007G023300--Sobic001G206200 Sobic002G338000 Sobic002G338000 Sobic007G023300--Sobic002G338000 Sobic001G339100 Sobic001G339100 Sobic007G023300--Sobic001G339100 Sobic007G178500 Sobic007G178500 Sobic007G023300--Sobic007G178500 Sobic002G030200 Sobic002G030200 Sobic007G023300--Sobic002G030200 Sobic004G234200 Sobic004G234200 Sobic004G193400--Sobic004G234200 Sobic004G193400--Sobic002G414400 Sobic002G297300 Sobic002G297300 Sobic004G193400--Sobic002G297300 Sobic004G193400--Sobic007G023300 Sobic009G091800 Sobic009G091800 Sobic004G193400--Sobic009G091800 Sobic002G288300 Sobic002G288300 Sobic004G193400--Sobic002G288300 Sobic010G022100 Sobic010G022100 Sobic004G193400--Sobic010G022100 Sobic008G117400 Sobic008G117400 Sobic004G193400--Sobic008G117400 Sobic004G193400--Sobic002G030200 Sobic002G414400--Sobic002G338000 Sobic010G000500 Sobic010G000500 Sobic002G414400--Sobic010G000500 Sobic002G414400--Sobic001G206200 Sobic002G414400--Sobic004G193400 Sobic002G414400--Sobic002G030200 Sobic002G414400--Sobic004G234200 Sobic003G055300 Sobic003G055300 Sobic002G414400--Sobic003G055300 Sobic002G414400--Sobic002G297300 Sobic002G414400--Sobic002G288300 Sobic001G407900--Sobic007G023300 Sobic001G407900--Sobic001G339100 Sobic001G498300 Sobic001G498300 Sobic001G407900--Sobic001G498300 Sobic001G407900--Sobic001G206200 Sobic010G218600 Sobic010G218600 Sobic001G407900--Sobic010G218600 Sobic001G407900--Sobic008G117400 Sobic001G042301 Sobic001G042301 Sobic001G407900--Sobic001G042301 Sobic002G242000 Sobic002G242000 Sobic001G407900--Sobic002G242000 Sobic001G407900--Sobic004G193400 Sobic001G177000 Sobic001G177000 Sobic008G063500--Sobic001G177000 Sobic008G063500--Sobic002G030200 Sobic008G063500--Sobic002G242000 Sobic007G136900 Sobic007G136900 Sobic008G063500--Sobic007G136900 Sobic003G209900 Sobic003G209900 Sobic008G063500--Sobic003G209900 Sobic004G056900 Sobic004G056900 Sobic008G063500--Sobic004G056900 Sobic001G046900 Sobic001G046900 Sobic008G063500--Sobic001G046900 Sobic002G316700 Sobic002G316700 Sobic008G063500--Sobic002G316700 Sobic008G063500--Sobic002G338000 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic009G234600 Sobic009G234600 Sobic001G206200--Sobic009G234600 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic002G338000--Sobic002G352100 Sobic002G338000--Sobic002G414400 Sobic002G338000--Sobic001G177000 Sobic002G338000--Sobic009G234600 Sobic009G028400 Sobic009G028400 Sobic001G339100--Sobic009G028400 Sobic001G339100--Sobic007G023300 Sobic001G339100--Sobic001G407900 Sobic001G006000 Sobic001G006000 Sobic001G339100--Sobic001G006000 Sobic001G339100--Sobic007G178500 Sobic005G021600 Sobic005G021600 Sobic001G339100--Sobic005G021600 Sobic001G339100--Sobic008G063500 Sobic003G221700 Sobic003G221700 Sobic001G339100--Sobic003G221700 Sobic006G197700 Sobic006G197700 Sobic001G339100--Sobic006G197700 Sobic007G178500--Sobic007G023300 Sobic003G187000 Sobic003G187000 Sobic007G178500--Sobic003G187000 Sobic007G178500--Sobic008G063500 Sobic007G178500--Sobic005G021600 Sobic007G178500--Sobic001G498300 Sobic007G178500--Sobic001G339100 Sobic007G178500--Sobic009G028400 Sobic010G265500 Sobic010G265500 Sobic007G178500--Sobic010G265500 Sobic007G178500--Sobic010G218600 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600
Octagon: transcription factors


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