Gene annotation
Transcriptome id Sobic.003G055300.1
Synonym Sb03g004730, PSBX
Functional annotation - (PubMedID : 29017446)
ultraviolet-B-repressible protein, putative, expressed
UniProt C5XNI4
Pfam PF06596
Panther DB PTHR34455 PTHR34455:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0015979photosynthesis GO:0009523photosystem II


Orthologs (automatic annotation)
TAIR AT2G06520 : photosystem II subunit X
RAP-DB (Rice) LOC_Os07g47640.1 : ultraviolet-B-repressible protein, putative, expressed
MaizeGDB (Corn) Zm00025a049130 , Zm00025a035697
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G055300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
2 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
3 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
4 Sobic.002G030200 Photosystem II subunit P(PubMedID : 29017446)@PsbP, putative, expressed K02717: photosystem II oxygen-evolving enhancer protein 2
5 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
6 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
7 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
8 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
9 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
10 Sobic.009G234600 Chorophyll a/b binding protein M9(PubMedID : 26186930)@chlorophyll A-B binding protein, putative, expressed K08912: light-harvesting complex II chlorophyll a/b binding protein 1
11 Sobic.002G414400 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
12 Sobic.010G241000 oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed K02716: photosystem II oxygen-evolving enhancer protein 1
13 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
14 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
15 Sobic.001G177000 Chorophyll a/b binding protein(PubMedID : 26186930)@Chorophyll a/b binding protein(PubMedID : 26186930)@Light harvesting complex-II subunit B2(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08913: light-harvesting complex II chlorophyll a/b binding protein 2
16 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
17 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
18 Sobic.006G264900 -(PubMedID : 29017446)@magnesium-chelatase, putative, expressed K03403: chlH, magnesium chelatase subunit H
19 Sobic.009G165200 plant-specific domain TIGR01589 family protein, expressed -
20 Sobic.002G329600 Oxygen-evolving enhancer protein 3-1(PubMedID : 26186930)@Ferredoxin-NADP reductase-binding protein (Zm)(PubMedID : 27208977)@-(PubMedID : 29017446)@oxygen evolving enhancer protein 3 domain containing protein, expressed K08901: photosystem II oxygen-evolving enhancer protein 3


Gene co-expression network
sample Sobic003G055300 Sobic003G055300 Sobic002G338000 Sobic002G338000 Sobic003G055300--Sobic002G338000 Sobic001G206200 Sobic001G206200 Sobic003G055300--Sobic001G206200 Sobic010G000500 Sobic010G000500 Sobic003G055300--Sobic010G000500 Sobic002G030200 Sobic002G030200 Sobic003G055300--Sobic002G030200 Sobic001G046900 Sobic001G046900 Sobic003G055300--Sobic001G046900 Sobic002G352100 Sobic002G352100 Sobic003G055300--Sobic002G352100 Sobic005G087000 Sobic005G087000 Sobic003G055300--Sobic005G087000 Sobic009G229700 Sobic009G229700 Sobic003G055300--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic003G055300--Sobic002G242000 Sobic002G338000--Sobic010G000500 Sobic002G338000--Sobic003G055300 Sobic002G338000--Sobic001G206200 Sobic002G338000--Sobic002G030200 Sobic002G338000--Sobic001G046900 Sobic002G338000--Sobic002G352100 Sobic002G414400 Sobic002G414400 Sobic002G338000--Sobic002G414400 Sobic001G177000 Sobic001G177000 Sobic002G338000--Sobic001G177000 Sobic009G234600 Sobic009G234600 Sobic002G338000--Sobic009G234600 Sobic001G206200--Sobic002G338000 Sobic001G206200--Sobic003G055300 Sobic001G206200--Sobic010G000500 Sobic001G206200--Sobic002G414400 Sobic001G206200--Sobic002G030200 Sobic001G206200--Sobic009G234600 Sobic004G234200 Sobic004G234200 Sobic001G206200--Sobic004G234200 Sobic001G206200--Sobic001G046900 Sobic002G329600 Sobic002G329600 Sobic001G206200--Sobic002G329600 Sobic010G000500--Sobic002G338000 Sobic010G000500--Sobic002G030200 Sobic010G000500--Sobic003G055300 Sobic010G000500--Sobic001G206200 Sobic010G000500--Sobic009G234600 Sobic006G264900 Sobic006G264900 Sobic010G000500--Sobic006G264900 Sobic010G000500--Sobic001G046900 Sobic010G000500--Sobic002G414400 Sobic010G000500--Sobic001G177000 Sobic002G030200--Sobic010G000500 Sobic002G030200--Sobic001G177000 Sobic002G030200--Sobic002G338000 Sobic002G030200--Sobic002G242000 Sobic010G241000 Sobic010G241000 Sobic002G030200--Sobic010G241000 Sobic002G030200--Sobic003G055300 Sobic008G063500 Sobic008G063500 Sobic002G030200--Sobic008G063500 Sobic002G030200--Sobic001G046900 Sobic002G030200--Sobic002G329600 Sobic001G046900--Sobic002G352100 Sobic004G056900 Sobic004G056900 Sobic001G046900--Sobic004G056900 Sobic007G136900 Sobic007G136900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic006G073500 Sobic006G073500 Sobic001G046900--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic001G046900--Sobic002G033900 Sobic001G046900--Sobic001G177000 Sobic004G235200 Sobic004G235200 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic002G352100--Sobic001G046900 Sobic002G352100--Sobic007G136900 Sobic010G189300 Sobic010G189300 Sobic002G352100--Sobic010G189300 Sobic002G352100--Sobic002G338000 Sobic002G352100--Sobic005G087000 Sobic002G352100--Sobic003G055300 Sobic009G165200 Sobic009G165200 Sobic002G352100--Sobic009G165200 Sobic002G352100--Sobic009G229700 Sobic002G352100--Sobic004G235200 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic005G087000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic005G087000--Sobic005G042000 Sobic009G229700--Sobic006G073500 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic009G229700--Sobic004G056900 Sobic005G152600 Sobic005G152600 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic002G242000--Sobic004G056900 Sobic002G242000--Sobic001G177000 Sobic002G242000--Sobic001G046900 Sobic002G242000--Sobic001G070500 Sobic002G242000--Sobic007G136900 Sobic002G242000--Sobic002G030200 Sobic002G242000--Sobic002G033900 Sobic002G242000--Sobic010G241000 Sobic002G242000--Sobic008G063500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.