Gene annotation
Transcriptome id Sobic.009G165200.1
Synonym Sb09g022720
Functional annotation plant-specific domain TIGR01589 family protein, expressed
UniProt C5YZB2
Pfam PF09713
Panther DB PTHR31871 PTHR31871:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G02580 : Plant protein 1589 of unknown function
RAP-DB (Rice) LOC_Os05g38680.1 : plant-specific domain TIGR01589 family protein, expressed
MaizeGDB (Corn) Zm00025a039698 , Zm00025a043909
Brachypodium KQK10485 , KQK22287 , PNT77642
Barley HORVU1Hr1G071910.1 , HORVU1Hr1G071910.2 , HORVU3Hr1G087010.3 , HORVU3Hr1G087010.2 , HORVU3Hr1G087010.1
Wheat TraesCS3B02G388300 , TraesCS1B02G296600 , TraesCS4B02G202900 , TraesCS4B02G202900 , TraesCS1A02G287200 , TraesCS3D02G349400 , TraesCS1D02G286100 , TraesCS4D02G203800 , TraesCS4A02G101700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G352100 Chorophyll a/b binding protein 7(PubMedID : 26186930)@Chlorophyll a-b binding protein (At)(PubMedID : 27208977)@Chlorophyll binding protein LHCA2 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2
2 Sobic.009G229700 Photosystem I reaction center subunit VI(PubMedID : 26186930)@expressed protein K02695: photosystem I subunit VI
3 Sobic.005G087000 Chorophyll a/b binding protein CP26(PubMedID : 26186930)@Light harvesting complex PSII subunit 5 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B5(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08916: light-harvesting complex II chlorophyll a/b binding protein 5
4 Sobic.005G152600 - -
5 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
6 Sobic.001G066600 mTERF domain containing protein, expressed -
7 Sobic.003G055300 -(PubMedID : 29017446)@ultraviolet-B-repressible protein, putative, expressed -
8 Sobic.001G046900 Photosystem I reaction center subunit II(PubMedID : 26186930)@photosystem I subunit D-1(PubMedID : 26465154)@photosystem I subunit D-1(PubMedID : 26465154)@Photosystem I subunit D(PubMedID : 29017446)@photosystem I reaction center subunit II, chloroplast precursor, putative, expressed K02692: photosystem I subunit II
9 Sobic.006G073500 hypothetical protein SORBIDRAFT_06g016090(PubMedID : 26186930)@Photosystem I subunit O PSI-O (At)(PubMedID : 27208977)@membrane protein, putative, expressed K14332: photosystem I subunit PsaO
10 Sobic.007G136900 Chorophyll a/b binding protein 4(PubMedID : 26186930)@Light harvesting complex PSI subunit A4 (At)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed K08910: light-harvesting complex I chlorophyll a/b binding protein 4
11 Sobic.003G369000 - -
12 Sobic.002G033900 Photosystem I reaction center subunit psaK(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K02698: photosystem I subunit X
13 Sobic.002G338000 Chorophyll a/b binding protein CP29.1(PubMedID : 26186930)@Chlorophyll A-B binding protein CP29 LHCB4 (At)(PubMedID : 27208977)@Light harvesting complex-II subunit B4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08915: light-harvesting complex II chlorophyll a/b binding protein 4
14 Sobic.004G235200 ATP synthase delta chain(PubMedID : 26186930)@-(PubMedID : 29017446)@ATP synthase F1, delta subunit family protein, putative, expressed K02113: ATPF1D, F-type H+-transporting ATPase subunit delta
15 Sobic.001G070500 Photosystem I reaction center subunit III(PubMedID : 26186930)@photosystem I subunit F(PubMedID : 26465154)@photosystem I subunit F(PubMedID : 26465154)@Photosystem I subunit F(PubMedID : 29017446)@photosystem I reaction center subunit III, chloroplast precursor, putative, expressed K02694: photosystem I subunit III
16 Sobic.010G000500 Plastocyanin(PubMedID : 26186930)@plastocyanin, chloroplast precursor, putative, expressed K02638: plastocyanin
17 Sobic.001G206200 oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed K00218: protochlorophyllide reductase
18 Sobic.005G042000 Ribulose bisphosphate carboxylase small chain(PubMedID : 26186930)@rubisco small subunit 1A(PubMedID : 26317421)@RuBisCO small chain (Os)(PubMedID : 27208977)@-(PubMedID : 26976818)@CO2 fixation reaction(PubMedID : 21562335)@ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed K01602: ribulose-bisphosphate carboxylase small chain
19 Sobic.002G242000 Photosystem I reaction center subunit V(PubMedID : 26186930)@photosystem I reaction center subunit, chloroplast precursor, putative, expressed K08905: photosystem I subunit V
20 Sobic.004G056900 Chorophyll a/b binding protein 1B-21(PubMedID : 26186930)@Light harvesting complex-I subunit A4(PubMedID : 29017446)@chlorophyll A-B binding protein, putative, expressed K08907: light-harvesting complex I chlorophyll a/b binding protein 1


Gene co-expression network
sample Sobic009G165200 Sobic009G165200 Sobic002G352100 Sobic002G352100 Sobic009G165200--Sobic002G352100 Sobic009G229700 Sobic009G229700 Sobic009G165200--Sobic009G229700 Sobic005G087000 Sobic005G087000 Sobic009G165200--Sobic005G087000 Sobic005G152600 Sobic005G152600 Sobic009G165200--Sobic005G152600 Sobic010G189300 Sobic010G189300 Sobic009G165200--Sobic010G189300 Sobic001G066600 Sobic001G066600 Sobic009G165200--Sobic001G066600 Sobic003G055300 Sobic003G055300 Sobic009G165200--Sobic003G055300 Sobic001G046900 Sobic001G046900 Sobic009G165200--Sobic001G046900 Sobic006G073500 Sobic006G073500 Sobic009G165200--Sobic006G073500 Sobic002G352100--Sobic001G046900 Sobic007G136900 Sobic007G136900 Sobic002G352100--Sobic007G136900 Sobic002G352100--Sobic010G189300 Sobic002G338000 Sobic002G338000 Sobic002G352100--Sobic002G338000 Sobic002G352100--Sobic005G087000 Sobic002G352100--Sobic003G055300 Sobic002G352100--Sobic009G165200 Sobic002G352100--Sobic009G229700 Sobic004G235200 Sobic004G235200 Sobic002G352100--Sobic004G235200 Sobic009G229700--Sobic006G073500 Sobic002G033900 Sobic002G033900 Sobic009G229700--Sobic002G033900 Sobic009G229700--Sobic005G087000 Sobic009G229700--Sobic001G046900 Sobic001G070500 Sobic001G070500 Sobic009G229700--Sobic001G070500 Sobic009G229700--Sobic010G189300 Sobic004G056900 Sobic004G056900 Sobic009G229700--Sobic004G056900 Sobic009G229700--Sobic005G152600 Sobic009G229700--Sobic002G352100 Sobic005G087000--Sobic006G073500 Sobic005G087000--Sobic009G229700 Sobic005G087000--Sobic001G046900 Sobic005G087000--Sobic002G033900 Sobic005G087000--Sobic004G235200 Sobic010G241000 Sobic010G241000 Sobic005G087000--Sobic010G241000 Sobic005G087000--Sobic002G352100 Sobic009G234600 Sobic009G234600 Sobic005G087000--Sobic009G234600 Sobic005G042000 Sobic005G042000 Sobic005G087000--Sobic005G042000 Sobic005G152600--Sobic009G229700 Sobic005G152600--Sobic005G087000 Sobic005G152600--Sobic006G073500 Sobic005G152600--Sobic009G165200 Sobic005G152600--Sobic002G033900 Sobic005G152600--Sobic001G046900 Sobic005G152600--Sobic003G055300 Sobic005G152600--Sobic001G066600 Sobic001G274600 Sobic001G274600 Sobic005G152600--Sobic001G274600 Sobic010G189300--Sobic001G070500 Sobic010G189300--Sobic007G136900 Sobic010G189300--Sobic001G046900 Sobic010G189300--Sobic006G073500 Sobic010G189300--Sobic002G352100 Sobic010G189300--Sobic002G033900 Sobic010G189300--Sobic009G229700 Sobic010G189300--Sobic004G235200 Sobic010G189300--Sobic005G087000 Sobic001G066600--Sobic009G229700 Sobic001G066600--Sobic009G165200 Sobic001G066600--Sobic010G189300 Sobic001G066600--Sobic002G033900 Sobic008G117300 Sobic008G117300 Sobic001G066600--Sobic008G117300 Sobic001G066600--Sobic005G152600 Sobic001G066600--Sobic001G070500 Sobic001G066600--Sobic006G073500 Sobic001G066600--Sobic002G352100 Sobic003G055300--Sobic002G338000 Sobic001G206200 Sobic001G206200 Sobic003G055300--Sobic001G206200 Sobic010G000500 Sobic010G000500 Sobic003G055300--Sobic010G000500 Sobic002G030200 Sobic002G030200 Sobic003G055300--Sobic002G030200 Sobic003G055300--Sobic001G046900 Sobic003G055300--Sobic002G352100 Sobic003G055300--Sobic005G087000 Sobic003G055300--Sobic009G229700 Sobic002G242000 Sobic002G242000 Sobic003G055300--Sobic002G242000 Sobic001G046900--Sobic002G352100 Sobic001G046900--Sobic004G056900 Sobic001G046900--Sobic007G136900 Sobic001G046900--Sobic005G087000 Sobic001G046900--Sobic006G073500 Sobic001G046900--Sobic002G033900 Sobic001G177000 Sobic001G177000 Sobic001G046900--Sobic001G177000 Sobic001G046900--Sobic004G235200 Sobic001G046900--Sobic002G242000 Sobic006G073500--Sobic002G033900 Sobic006G073500--Sobic009G229700 Sobic006G073500--Sobic005G087000 Sobic006G073500--Sobic001G070500 Sobic006G073500--Sobic001G046900 Sobic006G073500--Sobic004G056900 Sobic006G073500--Sobic010G189300 Sobic006G073500--Sobic010G241000 Sobic003G052500 Sobic003G052500 Sobic006G073500--Sobic003G052500
Octagon: transcription factors


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