Gene annotation
Transcriptome id Sobic.001G191000.1
Synonym Sb01g016780
Functional annotation ribosomal protein, putative, expressed
UniProt C5WVA6
Pfam PF03719 PF00333
Panther DB PTHR13718
NCBI CDD KOG0877; 40S ribosomal protein S2/30S ribosomal protein S5
KEGG Orthology K02988; RP-S5, MRPS5, small subunit ribosomal protein S5
Gene Ontology GO:0006412; translation GO:0005840ribosome GO:0003735structural constituent of ribosome GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G33800 : Ribosomal protein S5 family protein
RAP-DB (Rice) LOC_Os03g34040.1 : ribosomal protein, putative, expressed
MaizeGDB (Corn) Zm00025a006261
Brachypodium -
Barley HORVU4Hr1G038570.1
Wheat TraesCS4A02G167000 , TraesCS4B02G164800 , TraesCS4B02G164800 , TraesCS4B02G164800 , TraesCS4A02G167000 , TraesCS4D02G151500 , TraesCS4D02G151500 , TraesCS4D02G151500 , TraesCS4D02G151500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
2 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
3 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
4 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
5 Sobic.001G411300 ribosomal protein L10, putative, expressed K02864: RP-L10, MRPL10, large subunit ribosomal protein L10
6 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
7 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
8 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
9 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
10 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
11 Sobic.004G317900 expressed protein -
12 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
13 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
14 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
15 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
16 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
17 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
19 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
20 Sobic.001G017000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal protein S6, putative, expressed K02990: RP-S6, MRPS6, small subunit ribosomal protein S6


Gene co-expression network
sample Sobic001G191000 Sobic001G191000 Sobic006G280050 Sobic006G280050 Sobic001G191000--Sobic006G280050 Sobic003G256200 Sobic003G256200 Sobic001G191000--Sobic003G256200 Sobic003G246400 Sobic003G246400 Sobic001G191000--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G191000--Sobic001G027600 Sobic001G411300 Sobic001G411300 Sobic001G191000--Sobic001G411300 Sobic002G305700 Sobic002G305700 Sobic001G191000--Sobic002G305700 Sobic001G453300 Sobic001G453300 Sobic001G191000--Sobic001G453300 Sobic004G191200 Sobic004G191200 Sobic001G191000--Sobic004G191200 Sobic006G107600 Sobic006G107600 Sobic001G191000--Sobic006G107600 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic004G044000 Sobic004G044000 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic004G317900 Sobic004G317900 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic001G076500 Sobic001G076500 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic003G256200--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic003G256200--Sobic006G107600 Sobic001G427000 Sobic001G427000 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic003G256200--Sobic001G240000 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic010G233800 Sobic010G233800 Sobic003G246400--Sobic010G233800 Sobic003G393800 Sobic003G393800 Sobic003G246400--Sobic003G393800 Sobic001G027600--Sobic001G453300 Sobic001G027600--Sobic001G427000 Sobic001G027600--Sobic001G076500 Sobic001G027600--Sobic004G044000 Sobic001G027600--Sobic004G317900 Sobic001G383900 Sobic001G383900 Sobic001G027600--Sobic001G383900 Sobic003G295800 Sobic003G295800 Sobic001G027600--Sobic003G295800 Sobic001G027600--Sobic004G191200 Sobic001G027600--Sobic006G280050 Sobic001G411300--Sobic003G246400 Sobic001G411300--Sobic003G256200 Sobic001G411300--Sobic001G191000 Sobic001G411300--Sobic001G427000 Sobic001G411300--Sobic003G393800 Sobic001G411300--Sobic006G280050 Sobic001G411300--Sobic001G453300 Sobic001G411300--Sobic004G298100 Sobic009G179800 Sobic009G179800 Sobic001G411300--Sobic009G179800 Sobic002G305700--Sobic001G191000 Sobic001G333000 Sobic001G333000 Sobic002G305700--Sobic001G333000 Sobic002G305700--Sobic003G256200 Sobic002G305700--Sobic006G107600 Sobic002G305700--Sobic004G191200 Sobic002G305700--Sobic006G280050 Sobic006G248200 Sobic006G248200 Sobic002G305700--Sobic006G248200 Sobic009G212000 Sobic009G212000 Sobic002G305700--Sobic009G212000 Sobic002G305700--Sobic001G240000 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic003G132600 Sobic003G132600 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic004G191200--Sobic001G027600 Sobic004G191200--Sobic006G280050 Sobic003G202300 Sobic003G202300 Sobic004G191200--Sobic003G202300 Sobic004G191200--Sobic001G191000 Sobic004G191200--Sobic004G317900 Sobic004G191200--Sobic001G453300 Sobic007G034500 Sobic007G034500 Sobic004G191200--Sobic007G034500 Sobic004G191200--Sobic003G246400 Sobic004G191200--Sobic002G305700 Sobic006G107600--Sobic003G256200 Sobic006G107600--Sobic001G240000 Sobic007G171800 Sobic007G171800 Sobic006G107600--Sobic007G171800 Sobic001G040000 Sobic001G040000 Sobic006G107600--Sobic001G040000 Sobic006G107600--Sobic001G391400 Sobic006G107600--Sobic002G305700 Sobic001G122400 Sobic001G122400 Sobic006G107600--Sobic001G122400 Sobic006G107600--Sobic001G191000 Sobic006G107600--Sobic001G453300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.