Gene annotation
Transcriptome id Sobic.001G411300.1
Synonym Sb01g038810
Functional annotation ribosomal protein L10, putative, expressed
UniProt C5WNM7
Pfam PF00466
Panther DB PTHR11560 PTHR11560:SF8
NCBI CDD -
KEGG Orthology K02864; RP-L10, MRPL10, large subunit ribosomal protein L10
Gene Ontology GO:0005622; intracellular


Orthologs (automatic annotation)
TAIR AT5G13510 : Ribosomal protein L10 family protein
RAP-DB (Rice) LOC_Os03g17580.1 : ribosomal protein L10, putative, expressed
MaizeGDB (Corn) Zm00025a001931 , Zm00025a052706
Brachypodium PNT77607 , KQK22214
Barley HORVU4Hr1G057450.1 , HORVU4Hr1G057450.3 , HORVU4Hr1G057450.2
Wheat -
Populus -


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cDNA sequences
Sobic.001G411300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G246400 ribosomal protein L7/L12 C-terminal domain containing protein, expressed K02935: RP-L7, MRPL12, large subunit ribosomal protein L7/L12
2 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
3 Sobic.001G191000 ribosomal protein, putative, expressed K02988: RP-S5, MRPS5, small subunit ribosomal protein S5
4 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
5 Sobic.003G393800 30S ribosomal protein S31, chloroplast precursor, putative, expressed K19033: PSRP4, 30S ribosomal protein S31
6 Sobic.006G280050 - K02961: RP-S17, MRPS17, small subunit ribosomal protein S17
7 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
8 Sobic.004G298100 50S ribosomal protein L19, chloroplast precursor, putative, expressed K02884: RP-L19, MRPL19, large subunit ribosomal protein L19
9 Sobic.009G179800 - -
10 Sobic.003G246600 plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed K19035: 50S ribosomal protein 6
11 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
12 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
13 Sobic.003G328200 thylakoid lumenal 20 kDa protein, putative, expressed -
14 Sobic.005G128100 acyl carrier protein, putative, expressed -
15 Sobic.001G076500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
16 Sobic.009G130700 lumen 18.3kDa protein(PubMedID : 29017446)@thylakoid lumen protein, putative, expressed -
17 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
18 Sobic.004G317900 expressed protein -
19 Sobic.001G094200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium homeostasis regulator CHoR1, putative, expressed -
20 Sobic.004G116100 50S ribosomal protein L21, chloroplast precursor, putative, expressed K02888: RP-L21, MRPL21, large subunit ribosomal protein L21


Gene co-expression network
sample Sobic001G411300 Sobic001G411300 Sobic003G246400 Sobic003G246400 Sobic001G411300--Sobic003G246400 Sobic003G256200 Sobic003G256200 Sobic001G411300--Sobic003G256200 Sobic001G191000 Sobic001G191000 Sobic001G411300--Sobic001G191000 Sobic001G427000 Sobic001G427000 Sobic001G411300--Sobic001G427000 Sobic003G393800 Sobic003G393800 Sobic001G411300--Sobic003G393800 Sobic006G280050 Sobic006G280050 Sobic001G411300--Sobic006G280050 Sobic001G453300 Sobic001G453300 Sobic001G411300--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G411300--Sobic004G298100 Sobic009G179800 Sobic009G179800 Sobic001G411300--Sobic009G179800 Sobic004G317900 Sobic004G317900 Sobic003G246400--Sobic004G317900 Sobic003G246400--Sobic001G411300 Sobic003G246400--Sobic003G256200 Sobic003G246400--Sobic001G453300 Sobic003G328200 Sobic003G328200 Sobic003G246400--Sobic003G328200 Sobic003G246400--Sobic004G298100 Sobic003G246400--Sobic001G191000 Sobic010G233800 Sobic010G233800 Sobic003G246400--Sobic010G233800 Sobic003G246400--Sobic003G393800 Sobic003G256200--Sobic001G453300 Sobic003G256200--Sobic004G298100 Sobic003G256200--Sobic003G246400 Sobic003G256200--Sobic001G411300 Sobic003G256200--Sobic001G191000 Sobic006G107600 Sobic006G107600 Sobic003G256200--Sobic006G107600 Sobic003G256200--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic003G256200--Sobic001G391400 Sobic001G240000 Sobic001G240000 Sobic003G256200--Sobic001G240000 Sobic001G191000--Sobic006G280050 Sobic001G191000--Sobic003G256200 Sobic001G191000--Sobic003G246400 Sobic001G027600 Sobic001G027600 Sobic001G191000--Sobic001G027600 Sobic001G191000--Sobic001G411300 Sobic002G305700 Sobic002G305700 Sobic001G191000--Sobic002G305700 Sobic001G191000--Sobic001G453300 Sobic004G191200 Sobic004G191200 Sobic001G191000--Sobic004G191200 Sobic001G191000--Sobic006G107600 Sobic001G076500 Sobic001G076500 Sobic001G427000--Sobic001G076500 Sobic001G427000--Sobic001G027600 Sobic001G427000--Sobic001G453300 Sobic003G132600 Sobic003G132600 Sobic001G427000--Sobic003G132600 Sobic001G427000--Sobic010G233800 Sobic001G427000--Sobic003G256200 Sobic001G427000--Sobic003G393800 Sobic001G427000--Sobic003G246400 Sobic001G383900 Sobic001G383900 Sobic001G427000--Sobic001G383900 Sobic003G393800--Sobic010G233800 Sobic003G393800--Sobic001G076500 Sobic003G393800--Sobic003G246400 Sobic003G393800--Sobic009G179800 Sobic003G393800--Sobic001G427000 Sobic003G393800--Sobic001G453300 Sobic004G116100 Sobic004G116100 Sobic003G393800--Sobic004G116100 Sobic005G128100 Sobic005G128100 Sobic003G393800--Sobic005G128100 Sobic003G246600 Sobic003G246600 Sobic003G393800--Sobic003G246600 Sobic006G280050--Sobic001G191000 Sobic006G280050--Sobic001G027600 Sobic006G280050--Sobic003G246400 Sobic004G044000 Sobic004G044000 Sobic006G280050--Sobic004G044000 Sobic006G280050--Sobic004G191200 Sobic006G280050--Sobic004G317900 Sobic001G017000 Sobic001G017000 Sobic006G280050--Sobic001G017000 Sobic006G280050--Sobic001G076500 Sobic006G280050--Sobic001G453300 Sobic001G453300--Sobic001G027600 Sobic001G453300--Sobic001G427000 Sobic001G453300--Sobic001G383900 Sobic001G453300--Sobic003G256200 Sobic001G453300--Sobic001G076500 Sobic001G453300--Sobic010G233800 Sobic001G453300--Sobic003G246400 Sobic001G453300--Sobic003G132600 Sobic001G453300--Sobic001G391400 Sobic004G298100--Sobic003G256200 Sobic004G298100--Sobic001G391400 Sobic004G298100--Sobic003G246400 Sobic004G298100--Sobic001G453300 Sobic004G298100--Sobic004G116100 Sobic004G298100--Sobic001G240000 Sobic001G527100 Sobic001G527100 Sobic004G298100--Sobic001G527100 Sobic001G040000 Sobic001G040000 Sobic004G298100--Sobic001G040000 Sobic004G298100--Sobic004G317900 Sobic009G130700 Sobic009G130700 Sobic009G179800--Sobic009G130700 Sobic009G179800--Sobic003G393800 Sobic009G179800--Sobic003G246400 Sobic009G179800--Sobic003G246600 Sobic010G072900 Sobic010G072900 Sobic009G179800--Sobic010G072900 Sobic009G179800--Sobic001G411300 Sobic001G382100 Sobic001G382100 Sobic009G179800--Sobic001G382100 Sobic009G179800--Sobic005G128100 Sobic003G239300 Sobic003G239300 Sobic009G179800--Sobic003G239300
Octagon: transcription factors


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