Gene annotation
Transcriptome id Sobic.001G005500.1
Synonym Sb01g000590
Functional annotation plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
UniProt C5WRX8
Pfam PF02482 PF16321
Panther DB PTHR33231 PTHR33231:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24490 : 30S ribosomal protein, putative
RAP-DB (Rice) LOC_Os03g63950.1 : plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a009111
Brachypodium KQK12008
Barley HORVU5Hr1G124380.3 , HORVU5Hr1G124380.1 , HORVU5Hr1G124380.2
Wheat TraesCS5D02G565000 , TraesCS4A02G320200 , TraesCS5D02G564800 , TraesCS4A02G320200 , TraesCS5B02G559000 , TraesCS5B02G559000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G321600 dehydration response related protein, putative, expressed -
2 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
3 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
4 Sobic.001G093600 - -
5 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
6 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
7 Sobic.006G269400 expressed protein -
8 Sobic.006G273000 AT hook motif domain containing protein, expressed -
9 Sobic.007G191900 ACT domain containing protein, expressed -
10 Sobic.001G275200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
11 Sobic.003G284300 expressed protein -
12 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
13 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.010G089200 expressed protein -
15 Sobic.001G525900 homeobox domain containing protein, expressed -
16 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
17 Sobic.009G189000 expressed protein -
18 Sobic.001G145050 - -
19 Sobic.005G021600 expressed protein -
20 Sobic.003G107300 light-induced protein 1-like, putative, expressed -


Gene co-expression network
sample Sobic001G005500 Sobic001G005500 Sobic001G321600 Sobic001G321600 Sobic001G005500--Sobic001G321600 Sobic002G195700 Sobic002G195700 Sobic001G005500--Sobic002G195700 Sobic001G019300 Sobic001G019300 Sobic001G005500--Sobic001G019300 Sobic001G093600 Sobic001G093600 Sobic001G005500--Sobic001G093600 Sobic002G366100 Sobic002G366100 Sobic001G005500--Sobic002G366100 Sobic008G073400 Sobic008G073400 Sobic001G005500--Sobic008G073400 Sobic006G269400 Sobic006G269400 Sobic001G005500--Sobic006G269400 Sobic006G273000 Sobic006G273000 Sobic001G005500--Sobic006G273000 Sobic007G191900 Sobic007G191900 Sobic001G005500--Sobic007G191900 Sobic001G321600--Sobic001G005500 Sobic001G321600--Sobic001G019300 Sobic001G321600--Sobic002G195700 Sobic010G089200 Sobic010G089200 Sobic001G321600--Sobic010G089200 Sobic001G321600--Sobic008G073400 Sobic001G520100 Sobic001G520100 Sobic001G321600--Sobic001G520100 Sobic002G281000 Sobic002G281000 Sobic001G321600--Sobic002G281000 Sobic003G237000 Sobic003G237000 Sobic001G321600--Sobic003G237000 Sobic001G321600--Sobic002G366100 Sobic002G195700--Sobic001G005500 Sobic002G195700--Sobic008G073400 Sobic002G195700--Sobic001G321600 Sobic002G195700--Sobic001G019300 Sobic002G195700--Sobic002G366100 Sobic002G195700--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic002G195700--Sobic005G021600 Sobic002G195700--Sobic006G269400 Sobic001G198700 Sobic001G198700 Sobic002G195700--Sobic001G198700 Sobic002G265400 Sobic002G265400 Sobic001G019300--Sobic002G265400 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G019300--Sobic001G321600 Sobic001G019300--Sobic001G005500 Sobic001G019300--Sobic008G073400 Sobic001G019300--Sobic002G195700 Sobic005G190900 Sobic005G190900 Sobic001G019300--Sobic005G190900 Sobic001G019300--Sobic001G198700 Sobic003G107300 Sobic003G107300 Sobic001G093600--Sobic003G107300 Sobic001G093600--Sobic006G273000 Sobic001G093600--Sobic001G005500 Sobic001G275200 Sobic001G275200 Sobic001G093600--Sobic001G275200 Sobic003G255100 Sobic003G255100 Sobic001G093600--Sobic003G255100 Sobic007G179750 Sobic007G179750 Sobic001G093600--Sobic007G179750 Sobic003G284300 Sobic003G284300 Sobic001G093600--Sobic003G284300 Sobic001G093600--Sobic007G191900 Sobic001G093600--Sobic001G321600 Sobic002G366100--Sobic002G195700 Sobic001G145050 Sobic001G145050 Sobic002G366100--Sobic001G145050 Sobic002G366100--Sobic001G005500 Sobic009G255100 Sobic009G255100 Sobic002G366100--Sobic009G255100 Sobic006G060800 Sobic006G060800 Sobic002G366100--Sobic006G060800 Sobic002G366100--Sobic001G321600 Sobic002G366100--Sobic005G021600 Sobic004G068700 Sobic004G068700 Sobic002G366100--Sobic004G068700 Sobic001G404500 Sobic001G404500 Sobic002G366100--Sobic001G404500 Sobic008G073400--Sobic002G195700 Sobic008G073400--Sobic001G019300 Sobic003G106500 Sobic003G106500 Sobic008G073400--Sobic003G106500 Sobic008G073400--Sobic001G321600 Sobic008G073400--Sobic001G005500 Sobic008G073400--Sobic002G281000 Sobic008G073400--Sobic005G021600 Sobic008G073400--Sobic001G198700 Sobic005G089000 Sobic005G089000 Sobic008G073400--Sobic005G089000 Sobic006G269400--Sobic002G195700 Sobic006G269400--Sobic001G005500 Sobic006G269400--Sobic003G255100 Sobic006G269400--Sobic001G275200 Sobic006G269400--Sobic007G191900 Sobic010G079700 Sobic010G079700 Sobic006G269400--Sobic010G079700 Sobic006G269400--Sobic006G273000 Sobic006G269400--Sobic002G366100 Sobic006G269400--Sobic008G073400 Sobic006G273000--Sobic001G275200 Sobic006G273000--Sobic001G093600 Sobic010G245100 Sobic010G245100 Sobic006G273000--Sobic010G245100 Sobic006G273000--Sobic003G284300 Sobic006G273000--Sobic001G005500 Sobic009G213400 Sobic009G213400 Sobic006G273000--Sobic009G213400 Sobic010G246600 Sobic010G246600 Sobic006G273000--Sobic010G246600 Sobic010G052500 Sobic010G052500 Sobic006G273000--Sobic010G052500 Sobic006G273000--Sobic007G179750 Sobic007G191900--Sobic001G005500 Sobic007G191900--Sobic001G321600 Sobic007G191900--Sobic001G093600 Sobic007G191900--Sobic003G255100 Sobic001G525900 Sobic001G525900 Sobic007G191900--Sobic001G525900 Sobic007G191900--Sobic002G195700 Sobic007G191900--Sobic006G269400 Sobic007G191900--Sobic002G281000 Sobic007G191900--Sobic006G273000
Octagon: transcription factors


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