Gene annotation
Transcriptome id Sobic.001G179100.1
Synonym Sb01g015580, PIFI
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed
UniProt C5WU61
Pfam -
Panther DB PTHR32429 PTHR32429:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15840 : post-illumination chlorophyll fluorescence increase
RAP-DB (Rice) LOC_Os03g38950.1 : chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed
MaizeGDB (Corn) Zm00025a017353 , Zm00025a007123
Brachypodium KQK14316
Barley -
Wheat TraesCS7B02G289200 , TraesCS7D02G382900 , TraesCS7A02G386300
Populus -


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cDNA sequences
Sobic.001G179100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
2 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
3 Sobic.002G155900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G287000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@flavin-containing monooxygenase family protein, putative, expressed K00485: dimethylaniline monooxygenase (N-oxide forming)
5 Sobic.009G238100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
6 Sobic.003G255100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
8 Sobic.008G111300 transporter family protein, putative, expressed -
9 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
11 Sobic.006G060800 basic proline-rich protein, putative, expressed -
12 Sobic.001G030500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytokinin-N-glucosyltransferase 1, putative, expressed -
13 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
14 Sobic.002G226100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.008G137800 expressed protein -
16 Sobic.010G079700 1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed -
17 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
18 Sobic.007G191900 ACT domain containing protein, expressed -
19 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.009G253000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA polymerase sigma factor, putative, expressed -


Gene co-expression network
sample Sobic001G179100 Sobic001G179100 Sobic004G068700 Sobic004G068700 Sobic001G179100--Sobic004G068700 Sobic003G214000 Sobic003G214000 Sobic001G179100--Sobic003G214000 Sobic002G155900 Sobic002G155900 Sobic001G179100--Sobic002G155900 Sobic002G287000 Sobic002G287000 Sobic001G179100--Sobic002G287000 Sobic009G238100 Sobic009G238100 Sobic001G179100--Sobic009G238100 Sobic003G255100 Sobic003G255100 Sobic001G179100--Sobic003G255100 Sobic001G161300 Sobic001G161300 Sobic001G179100--Sobic001G161300 Sobic008G111300 Sobic008G111300 Sobic001G179100--Sobic008G111300 Sobic002G366100 Sobic002G366100 Sobic001G179100--Sobic002G366100 Sobic004G068700--Sobic001G179100 Sobic004G068700--Sobic003G214000 Sobic004G068700--Sobic002G287000 Sobic004G068700--Sobic001G161300 Sobic004G068700--Sobic008G111300 Sobic002G384400 Sobic002G384400 Sobic004G068700--Sobic002G384400 Sobic004G068700--Sobic002G366100 Sobic002G226100 Sobic002G226100 Sobic004G068700--Sobic002G226100 Sobic002G386400 Sobic002G386400 Sobic004G068700--Sobic002G386400 Sobic003G214000--Sobic001G179100 Sobic003G214000--Sobic004G068700 Sobic004G078600 Sobic004G078600 Sobic003G214000--Sobic004G078600 Sobic003G214000--Sobic002G155900 Sobic001G320700 Sobic001G320700 Sobic003G214000--Sobic001G320700 Sobic008G137800 Sobic008G137800 Sobic003G214000--Sobic008G137800 Sobic009G075100 Sobic009G075100 Sobic003G214000--Sobic009G075100 Sobic001G201800 Sobic001G201800 Sobic003G214000--Sobic001G201800 Sobic003G214000--Sobic008G111300 Sobic002G155900--Sobic001G179100 Sobic002G155900--Sobic003G255100 Sobic002G155900--Sobic003G214000 Sobic006G152500 Sobic006G152500 Sobic002G155900--Sobic006G152500 Sobic010G079700 Sobic010G079700 Sobic002G155900--Sobic010G079700 Sobic009G085900 Sobic009G085900 Sobic002G155900--Sobic009G085900 Sobic001G410450 Sobic001G410450 Sobic002G155900--Sobic001G410450 Sobic004G217700 Sobic004G217700 Sobic002G155900--Sobic004G217700 Sobic002G155900--Sobic002G287000 Sobic002G287000--Sobic004G068700 Sobic002G287000--Sobic001G179100 Sobic002G287000--Sobic003G255100 Sobic002G287000--Sobic002G366100 Sobic001G321600 Sobic001G321600 Sobic002G287000--Sobic001G321600 Sobic002G287000--Sobic003G214000 Sobic001G005500 Sobic001G005500 Sobic002G287000--Sobic001G005500 Sobic002G287000--Sobic009G238100 Sobic002G195700 Sobic002G195700 Sobic002G287000--Sobic002G195700 Sobic008G148400 Sobic008G148400 Sobic009G238100--Sobic008G148400 Sobic001G426400 Sobic001G426400 Sobic009G238100--Sobic001G426400 Sobic009G253000 Sobic009G253000 Sobic009G238100--Sobic009G253000 Sobic009G238100--Sobic001G179100 Sobic005G169600 Sobic005G169600 Sobic009G238100--Sobic005G169600 Sobic009G036300 Sobic009G036300 Sobic009G238100--Sobic009G036300 Sobic003G030400 Sobic003G030400 Sobic009G238100--Sobic003G030400 Sobic007G227600 Sobic007G227600 Sobic009G238100--Sobic007G227600 Sobic002G038300 Sobic002G038300 Sobic009G238100--Sobic002G038300 Sobic003G255100--Sobic010G079700 Sobic001G093600 Sobic001G093600 Sobic003G255100--Sobic001G093600 Sobic003G255100--Sobic002G155900 Sobic003G255100--Sobic001G005500 Sobic003G255100--Sobic001G179100 Sobic001G030500 Sobic001G030500 Sobic003G255100--Sobic001G030500 Sobic006G269400 Sobic006G269400 Sobic003G255100--Sobic006G269400 Sobic003G255100--Sobic002G287000 Sobic007G191900 Sobic007G191900 Sobic003G255100--Sobic007G191900 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic001G161300--Sobic004G068700 Sobic001G276100 Sobic001G276100 Sobic001G161300--Sobic001G276100 Sobic001G161300--Sobic002G226100 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic008G111300--Sobic004G068700 Sobic008G111300--Sobic003G214000 Sobic008G111300--Sobic001G179100 Sobic008G111300--Sobic004G078600 Sobic008G111300--Sobic001G201800 Sobic003G361900 Sobic003G361900 Sobic008G111300--Sobic003G361900 Sobic008G111300--Sobic001G320700 Sobic004G209500 Sobic004G209500 Sobic008G111300--Sobic004G209500 Sobic003G402200 Sobic003G402200 Sobic008G111300--Sobic003G402200 Sobic002G366100--Sobic002G195700 Sobic001G145050 Sobic001G145050 Sobic002G366100--Sobic001G145050 Sobic002G366100--Sobic001G005500 Sobic009G255100 Sobic009G255100 Sobic002G366100--Sobic009G255100 Sobic006G060800 Sobic006G060800 Sobic002G366100--Sobic006G060800 Sobic002G366100--Sobic001G321600 Sobic005G021600 Sobic005G021600 Sobic002G366100--Sobic005G021600 Sobic002G366100--Sobic004G068700 Sobic001G404500 Sobic001G404500 Sobic002G366100--Sobic001G404500
Octagon: transcription factors


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