Gene annotation
Transcriptome id Sobic.002G226100.1
Synonym Sb02g026650, SCO2, CYO1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6QCX3
Pfam -
Panther DB PTHR36035 PTHR36035:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19220 : protein disulfide isomerases
RAP-DB (Rice) LOC_Os09g28480.1 : expressed protein
MaizeGDB (Corn) Zm00025a014071
Brachypodium PNT64724
Barley HORVU5Hr1G068470.1 , HORVU5Hr1G068470.2
Wheat TraesCS5D02G245900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G161300 mttA/Hcf106 family protein, putative, expressed K03116: sec-independent protein translocase protein TatA
2 Sobic.004G068700 cytochrome P450 71D10, putative, expressed -
3 Sobic.002G386400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
4 Sobic.002G384400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K03146: THI4, cysteine-dependent adenosine diphosphate thiazole synthase
5 Sobic.001G276100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
6 Sobic.001G416300 expressed protein -
7 Sobic.001G179100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed -
8 Sobic.006G197700 Unnamed(PubMedID : 24676859)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.008G111300 transporter family protein, putative, expressed -
10 Sobic.009G138900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.003G208300 PPR repeat domain containing protein, putative, expressed -
12 Sobic.007G136600 SET domain-containing protein, putative, expressed -
13 Sobic.007G132500 F-box domain containing protein, expressed -
14 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
15 Sobic.002G038300 RNA recognition motif containing protein, putative, expressed -
16 Sobic.005G021600 expressed protein -
17 Sobic.002G345200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.010G265500 expressed protein -
19 Sobic.009G000900 methyltransferase, putative, expressed K08241: jasmonate O-methyltransferase
20 Sobic.004G007500 cytochrome P450, putative, expressed K10528: hydroperoxide lyase


Gene co-expression network
sample Sobic002G226100 Sobic002G226100 Sobic001G161300 Sobic001G161300 Sobic002G226100--Sobic001G161300 Sobic004G068700 Sobic004G068700 Sobic002G226100--Sobic004G068700 Sobic002G386400 Sobic002G386400 Sobic002G226100--Sobic002G386400 Sobic002G384400 Sobic002G384400 Sobic002G226100--Sobic002G384400 Sobic001G276100 Sobic001G276100 Sobic002G226100--Sobic001G276100 Sobic001G416300 Sobic001G416300 Sobic002G226100--Sobic001G416300 Sobic001G179100 Sobic001G179100 Sobic002G226100--Sobic001G179100 Sobic006G197700 Sobic006G197700 Sobic002G226100--Sobic006G197700 Sobic008G111300 Sobic008G111300 Sobic002G226100--Sobic008G111300 Sobic002G038300 Sobic002G038300 Sobic001G161300--Sobic002G038300 Sobic004G007500 Sobic004G007500 Sobic001G161300--Sobic004G007500 Sobic001G161300--Sobic002G386400 Sobic001G161300--Sobic004G068700 Sobic001G161300--Sobic001G276100 Sobic001G161300--Sobic002G226100 Sobic001G161300--Sobic002G384400 Sobic004G343100 Sobic004G343100 Sobic001G161300--Sobic004G343100 Sobic009G000900 Sobic009G000900 Sobic001G161300--Sobic009G000900 Sobic004G068700--Sobic001G179100 Sobic003G214000 Sobic003G214000 Sobic004G068700--Sobic003G214000 Sobic002G287000 Sobic002G287000 Sobic004G068700--Sobic002G287000 Sobic004G068700--Sobic001G161300 Sobic004G068700--Sobic008G111300 Sobic004G068700--Sobic002G384400 Sobic002G366100 Sobic002G366100 Sobic004G068700--Sobic002G366100 Sobic004G068700--Sobic002G226100 Sobic004G068700--Sobic002G386400 Sobic002G386400--Sobic002G038300 Sobic003G208300 Sobic003G208300 Sobic002G386400--Sobic003G208300 Sobic002G386400--Sobic006G197700 Sobic002G386400--Sobic001G161300 Sobic002G163700 Sobic002G163700 Sobic002G386400--Sobic002G163700 Sobic003G330100 Sobic003G330100 Sobic002G386400--Sobic003G330100 Sobic010G028000 Sobic010G028000 Sobic002G386400--Sobic010G028000 Sobic009G234200 Sobic009G234200 Sobic002G386400--Sobic009G234200 Sobic001G388400 Sobic001G388400 Sobic002G386400--Sobic001G388400 Sobic002G384400--Sobic004G068700 Sobic002G384400--Sobic001G161300 Sobic009G138900 Sobic009G138900 Sobic002G384400--Sobic009G138900 Sobic002G384400--Sobic002G386400 Sobic002G384400--Sobic002G226100 Sobic002G384400--Sobic002G038300 Sobic004G314800 Sobic004G314800 Sobic002G384400--Sobic004G314800 Sobic006G204100 Sobic006G204100 Sobic002G384400--Sobic006G204100 Sobic002G345200 Sobic002G345200 Sobic002G384400--Sobic002G345200 Sobic001G276100--Sobic001G161300 Sobic001G276100--Sobic009G000900 Sobic001G276100--Sobic004G007500 Sobic001G276100--Sobic002G226100 Sobic009G197300 Sobic009G197300 Sobic001G276100--Sobic009G197300 Sobic003G355800 Sobic003G355800 Sobic001G276100--Sobic003G355800 Sobic001G276100--Sobic003G214000 Sobic006G052200 Sobic006G052200 Sobic001G276100--Sobic006G052200 Sobic001G276100--Sobic002G384400 Sobic006G170200 Sobic006G170200 Sobic001G416300--Sobic006G170200 Sobic001G416300--Sobic001G161300 Sobic001G416300--Sobic002G226100 Sobic001G427700 Sobic001G427700 Sobic001G416300--Sobic001G427700 Sobic004G018400 Sobic004G018400 Sobic001G416300--Sobic004G018400 Sobic009G190800 Sobic009G190800 Sobic001G416300--Sobic009G190800 Sobic003G402200 Sobic003G402200 Sobic001G416300--Sobic003G402200 Sobic005G089000 Sobic005G089000 Sobic001G416300--Sobic005G089000 Sobic008G142600 Sobic008G142600 Sobic001G416300--Sobic008G142600 Sobic001G179100--Sobic004G068700 Sobic001G179100--Sobic003G214000 Sobic002G155900 Sobic002G155900 Sobic001G179100--Sobic002G155900 Sobic001G179100--Sobic002G287000 Sobic009G238100 Sobic009G238100 Sobic001G179100--Sobic009G238100 Sobic003G255100 Sobic003G255100 Sobic001G179100--Sobic003G255100 Sobic001G179100--Sobic001G161300 Sobic001G179100--Sobic008G111300 Sobic001G179100--Sobic002G366100 Sobic003G245800 Sobic003G245800 Sobic006G197700--Sobic003G245800 Sobic006G197700--Sobic002G345200 Sobic006G111600 Sobic006G111600 Sobic006G197700--Sobic006G111600 Sobic007G132500 Sobic007G132500 Sobic006G197700--Sobic007G132500 Sobic003G439600 Sobic003G439600 Sobic006G197700--Sobic003G439600 Sobic006G197700--Sobic003G330100 Sobic003G221700 Sobic003G221700 Sobic006G197700--Sobic003G221700 Sobic006G197700--Sobic002G386400 Sobic006G197700--Sobic002G163700 Sobic008G111300--Sobic004G068700 Sobic008G111300--Sobic003G214000 Sobic008G111300--Sobic001G179100 Sobic004G078600 Sobic004G078600 Sobic008G111300--Sobic004G078600 Sobic001G201800 Sobic001G201800 Sobic008G111300--Sobic001G201800 Sobic003G361900 Sobic003G361900 Sobic008G111300--Sobic003G361900 Sobic001G320700 Sobic001G320700 Sobic008G111300--Sobic001G320700 Sobic004G209500 Sobic004G209500 Sobic008G111300--Sobic004G209500 Sobic008G111300--Sobic003G402200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.