Gene annotation
| Transcriptome id | Sobic.008G111300.1,Sobic.008G111300.2 |
|---|---|
| Synonym | PMT5, Sb08g016530, ATPLT5, ATPMT5 |
| Functional annotation | transporter family protein, putative, expressed |
| UniProt | C5YP63 , A0A1Z5R660 |
| Pfam | PF07690 |
| Panther DB | PTHR23500 PTHR23500:SF5 |
| NCBI CDD | KOG0254; Predicted transporter (major facilitator superfamily) |
| KEGG Orthology | - |
| Gene Ontology | GO:0016021; integral component of membrane |
Orthologs (automatic annotation)
| TAIR | AT3G18830 : polyol/monosaccharide transporter 5 |
|---|---|
| RAP-DB (Rice) | LOC_Os12g32940.1 : transporter family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a054423 |
| Brachypodium | KQJ86575 |
| Barley | HORVU5Hr1G028030.1 , HORVU5Hr1G028030.2 , HORVU5Hr1G106160.1 , HORVU5Hr1G106160.2 |
| Wheat | TraesCS5B02G106800 , TraesCS5B02G106800 , TraesCS5D02G114300 , TraesCS5D02G114300 , TraesCS5D02G114300 , TraesCS5A02G440100 , TraesCS4A02G042000 , TraesCS5D02G447300 , TraesCS4D02G262900 , TraesCS5A02G102500 , TraesCS5A02G102500 , TraesCS5A02G102500 |
| Populus | - |
JBrowse
| Sobic.008G111300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G068700 | cytochrome P450 71D10, putative, expressed | - |
| 2 | Sobic.003G214000 | Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed | - |
| 3 | Sobic.001G179100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed | - |
| 4 | Sobic.004G078600 | lipoxygenase, putative, expressed | K00454: lipoxygenase |
| 5 | Sobic.001G201800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | - |
| 6 | Sobic.003G361900 | dehydrodolichyl diphosphate synthase, putative, expressed | K11778: DHDDS, RER2, ditrans,polycis-polyprenyl diphosphate synthase |
| 7 | Sobic.001G320700 | prephenate dehydratase domain containing protein, expressed | - |
| 8 | Sobic.004G209500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.003G402200 | sensitivity to red light reduced protein 1, putative, expressed | - |
| 10 | Sobic.001G161300 | mttA/Hcf106 family protein, putative, expressed | K03116: sec-independent protein translocase protein TatA |
| 11 | Sobic.002G366100 | NAD dependent epimerase/dehydratase family protein, putative, expressed | - |
| 12 | Sobic.003G096500 | protein kinase domain containing protein, expressed | - |
| 13 | Sobic.006G060800 | basic proline-rich protein, putative, expressed | - |
| 14 | Sobic.010G130800 | Acyl activating enzyme 1 AAE1 (At)(PubMedID : 27208977)@AMP-binding enzyme, putative, expressed | K00666: fatty-acyl-CoA synthase |
| 15 | Sobic.003G310200 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 16 | Sobic.002G349400 | - | - |
| 17 | Sobic.001G315800 | shikimate/quinate 5-dehydrogenase, putative, expressed | - |
| 18 | Sobic.002G041800 | gibberellin receptor GID1L2, putative, expressed | - |
| 19 | Sobic.004G217700 | enzyme of the cupin superfamily protein, putative, expressed | K06995: uncharacterized protein |
| 20 | Sobic.002G423600 | "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed | K18819: inositol 3-alpha-galactosyltransferase |
Gene co-expression network
Octagon: transcription factors
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