Gene annotation
Transcriptome id Sobic.003G402200.2
Synonym SRR1, Sb03g043830
Functional annotation sensitivity to red light reduced protein 1, putative, expressed
UniProt A0A1W0W163
Pfam PF07985
Panther DB PTHR28626
NCBI CDD KOG3131; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G59560 : sensitivity to red light reduced protein (SRR1)
RAP-DB (Rice) LOC_Os05g02690.1 : sensitivity to red light reduced protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a032454
Brachypodium KQK07804
Barley HORVU1Hr1G010780.1 , HORVU1Hr1G010780.3 , HORVU1Hr1G010780.2 , HORVU1Hr1G010780.5 , HORVU1Hr1G010780.4 , HORVU1Hr1G010780.7 , HORVU1Hr1G010780.6
Wheat -
Populus -


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cDNA sequences
Sobic.003G402200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G145050 - -
2 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
3 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
4 Sobic.003G151800 expressed protein -
5 Sobic.001G320700 prephenate dehydratase domain containing protein, expressed -
6 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
7 Sobic.001G427700 anthranilate synthase component I-1, chloroplast precursor, putative, expressed K01657: anthranilate synthase component I
8 Sobic.005G089000 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.008G111300 transporter family protein, putative, expressed -
10 Sobic.003G214000 Highly abundant under cold stress(PubMedID : 26645959)@heat shock protein DnaJ, putative, expressed -
11 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
12 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
13 Sobic.001G315800 shikimate/quinate 5-dehydrogenase, putative, expressed -
14 Sobic.008G142600 amino acid permease family protein, putative, expressed -
15 Sobic.005G093300 - -
16 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
17 Sobic.002G271600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
18 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
19 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
20 Sobic.002G195700 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase


Gene co-expression network
sample Sobic003G402200 Sobic003G402200 Sobic001G145050 Sobic001G145050 Sobic003G402200--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic003G402200--Sobic009G205600 Sobic004G078600 Sobic004G078600 Sobic003G402200--Sobic004G078600 Sobic003G151800 Sobic003G151800 Sobic003G402200--Sobic003G151800 Sobic001G320700 Sobic001G320700 Sobic003G402200--Sobic001G320700 Sobic001G201800 Sobic001G201800 Sobic003G402200--Sobic001G201800 Sobic001G427700 Sobic001G427700 Sobic003G402200--Sobic001G427700 Sobic005G089000 Sobic005G089000 Sobic003G402200--Sobic005G089000 Sobic008G111300 Sobic008G111300 Sobic003G402200--Sobic008G111300 Sobic009G255100 Sobic009G255100 Sobic001G145050--Sobic009G255100 Sobic002G041800 Sobic002G041800 Sobic001G145050--Sobic002G041800 Sobic002G366100 Sobic002G366100 Sobic001G145050--Sobic002G366100 Sobic006G060800 Sobic006G060800 Sobic001G145050--Sobic006G060800 Sobic001G145050--Sobic003G402200 Sobic001G145050--Sobic004G078600 Sobic005G085500 Sobic005G085500 Sobic001G145050--Sobic005G085500 Sobic002G271600 Sobic002G271600 Sobic001G145050--Sobic002G271600 Sobic002G209100 Sobic002G209100 Sobic001G145050--Sobic002G209100 Sobic004G217700 Sobic004G217700 Sobic009G205600--Sobic004G217700 Sobic009G205600--Sobic003G402200 Sobic009G205600--Sobic002G271600 Sobic001G410450 Sobic001G410450 Sobic009G205600--Sobic001G410450 Sobic007G014600 Sobic007G014600 Sobic009G205600--Sobic007G014600 Sobic004G195800 Sobic004G195800 Sobic009G205600--Sobic004G195800 Sobic009G205600--Sobic002G209100 Sobic009G205600--Sobic006G060800 Sobic004G187300 Sobic004G187300 Sobic009G205600--Sobic004G187300 Sobic004G078600--Sobic001G201800 Sobic002G423600 Sobic002G423600 Sobic004G078600--Sobic002G423600 Sobic009G115400 Sobic009G115400 Sobic004G078600--Sobic009G115400 Sobic004G078600--Sobic002G041800 Sobic009G075100 Sobic009G075100 Sobic004G078600--Sobic009G075100 Sobic005G182701 Sobic005G182701 Sobic004G078600--Sobic005G182701 Sobic001G012000 Sobic001G012000 Sobic004G078600--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic004G078600--Sobic009G252100 Sobic007G055600 Sobic007G055600 Sobic004G078600--Sobic007G055600 Sobic003G151800--Sobic003G402200 Sobic003G151800--Sobic009G205600 Sobic003G151800--Sobic001G145050 Sobic003G151800--Sobic002G271600 Sobic003G151800--Sobic005G089000 Sobic006G053700 Sobic006G053700 Sobic003G151800--Sobic006G053700 Sobic008G137800 Sobic008G137800 Sobic003G151800--Sobic008G137800 Sobic003G151800--Sobic007G014600 Sobic003G255100 Sobic003G255100 Sobic003G151800--Sobic003G255100 Sobic003G214000 Sobic003G214000 Sobic001G320700--Sobic003G214000 Sobic001G320700--Sobic004G217700 Sobic001G320700--Sobic001G201800 Sobic001G320700--Sobic002G423600 Sobic001G320700--Sobic004G078600 Sobic010G214200 Sobic010G214200 Sobic001G320700--Sobic010G214200 Sobic006G045000 Sobic006G045000 Sobic001G320700--Sobic006G045000 Sobic001G320700--Sobic003G402200 Sobic003G248901 Sobic003G248901 Sobic001G320700--Sobic003G248901 Sobic001G201800--Sobic004G078600 Sobic001G201800--Sobic009G115400 Sobic001G201800--Sobic002G423600 Sobic001G201800--Sobic001G012000 Sobic001G201800--Sobic009G252100 Sobic002G202700 Sobic002G202700 Sobic001G201800--Sobic002G202700 Sobic001G201800--Sobic006G045000 Sobic001G056400 Sobic001G056400 Sobic001G201800--Sobic001G056400 Sobic002G108400 Sobic002G108400 Sobic001G201800--Sobic002G108400 Sobic008G142600 Sobic008G142600 Sobic001G427700--Sobic008G142600 Sobic001G427700--Sobic003G402200 Sobic004G018400 Sobic004G018400 Sobic001G427700--Sobic004G018400 Sobic001G427700--Sobic001G320700 Sobic001G416300 Sobic001G416300 Sobic001G427700--Sobic001G416300 Sobic003G213900 Sobic003G213900 Sobic001G427700--Sobic003G213900 Sobic001G315800 Sobic001G315800 Sobic001G427700--Sobic001G315800 Sobic001G427700--Sobic004G217700 Sobic001G427700--Sobic010G214200 Sobic002G195700 Sobic002G195700 Sobic005G089000--Sobic002G195700 Sobic001G321600 Sobic001G321600 Sobic005G089000--Sobic001G321600 Sobic008G073400 Sobic008G073400 Sobic005G089000--Sobic008G073400 Sobic001G019300 Sobic001G019300 Sobic005G089000--Sobic001G019300 Sobic001G005500 Sobic001G005500 Sobic005G089000--Sobic001G005500 Sobic003G135800 Sobic003G135800 Sobic005G089000--Sobic003G135800 Sobic003G291400 Sobic003G291400 Sobic005G089000--Sobic003G291400 Sobic003G106500 Sobic003G106500 Sobic005G089000--Sobic003G106500 Sobic001G452700 Sobic001G452700 Sobic005G089000--Sobic001G452700 Sobic004G068700 Sobic004G068700 Sobic008G111300--Sobic004G068700 Sobic008G111300--Sobic003G214000 Sobic001G179100 Sobic001G179100 Sobic008G111300--Sobic001G179100 Sobic008G111300--Sobic004G078600 Sobic008G111300--Sobic001G201800 Sobic003G361900 Sobic003G361900 Sobic008G111300--Sobic003G361900 Sobic008G111300--Sobic001G320700 Sobic004G209500 Sobic004G209500 Sobic008G111300--Sobic004G209500 Sobic008G111300--Sobic003G402200
Octagon: transcription factors


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