Gene annotation
Transcriptome id Sobic.001G315800.1
Synonym Sb01g030690
Functional annotation shikimate/quinate 5-dehydrogenase, putative, expressed
UniProt C5WUG1
Pfam PF01488
Panther DB PTHR13812 PTHR13812:SF19
NCBI CDD KOG3007; Mu-crystallin
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52810 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os10g38930.1 : shikimate/quinate 5-dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a003134
Brachypodium KQJ97574
Barley HORVU1Hr1G049490.2 , HORVU1Hr1G049490.1
Wheat -
Populus -


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cDNA sequences
Sobic.001G315800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G201800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
2 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
3 Sobic.004G209500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G045000 drought-induced protein 1, putative, expressed -
5 Sobic.005G085500 - -
6 Sobic.002G209100 glutamate receptor, putative, expressed -
7 Sobic.002G349400 - -
8 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
9 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
10 Sobic.009G252100 expressed protein -
11 Sobic.009G075100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@lachrymatory factor synthase, putative, expressed -
12 Sobic.001G320700 prephenate dehydratase domain containing protein, expressed -
13 Sobic.010G120800 Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed -
14 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
15 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.005G193600 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
17 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -
18 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
19 Sobic.001G410450 - -
20 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G315800 Sobic001G315800 Sobic001G201800 Sobic001G201800 Sobic001G315800--Sobic001G201800 Sobic004G078600 Sobic004G078600 Sobic001G315800--Sobic004G078600 Sobic004G209500 Sobic004G209500 Sobic001G315800--Sobic004G209500 Sobic006G045000 Sobic006G045000 Sobic001G315800--Sobic006G045000 Sobic005G085500 Sobic005G085500 Sobic001G315800--Sobic005G085500 Sobic002G209100 Sobic002G209100 Sobic001G315800--Sobic002G209100 Sobic002G349400 Sobic002G349400 Sobic001G315800--Sobic002G349400 Sobic002G423600 Sobic002G423600 Sobic001G315800--Sobic002G423600 Sobic004G195800 Sobic004G195800 Sobic001G315800--Sobic004G195800 Sobic001G201800--Sobic004G078600 Sobic009G115400 Sobic009G115400 Sobic001G201800--Sobic009G115400 Sobic001G201800--Sobic002G423600 Sobic001G012000 Sobic001G012000 Sobic001G201800--Sobic001G012000 Sobic009G252100 Sobic009G252100 Sobic001G201800--Sobic009G252100 Sobic002G202700 Sobic002G202700 Sobic001G201800--Sobic002G202700 Sobic001G201800--Sobic006G045000 Sobic001G056400 Sobic001G056400 Sobic001G201800--Sobic001G056400 Sobic002G108400 Sobic002G108400 Sobic001G201800--Sobic002G108400 Sobic004G078600--Sobic001G201800 Sobic004G078600--Sobic002G423600 Sobic004G078600--Sobic009G115400 Sobic002G041800 Sobic002G041800 Sobic004G078600--Sobic002G041800 Sobic009G075100 Sobic009G075100 Sobic004G078600--Sobic009G075100 Sobic005G182701 Sobic005G182701 Sobic004G078600--Sobic005G182701 Sobic004G078600--Sobic001G012000 Sobic004G078600--Sobic009G252100 Sobic007G055600 Sobic007G055600 Sobic004G078600--Sobic007G055600 Sobic009G216050 Sobic009G216050 Sobic004G209500--Sobic009G216050 Sobic004G209500--Sobic006G045000 Sobic010G214200 Sobic010G214200 Sobic004G209500--Sobic010G214200 Sobic003G310500 Sobic003G310500 Sobic004G209500--Sobic003G310500 Sobic004G209500--Sobic005G085500 Sobic009G233900 Sobic009G233900 Sobic004G209500--Sobic009G233900 Sobic002G216500 Sobic002G216500 Sobic004G209500--Sobic002G216500 Sobic004G209500--Sobic002G209100 Sobic004G217700 Sobic004G217700 Sobic004G209500--Sobic004G217700 SobicK044407 SobicK044407 Sobic006G045000--SobicK044407 Sobic006G045000--Sobic001G012000 Sobic006G045000--Sobic001G056400 Sobic008G181801 Sobic008G181801 Sobic006G045000--Sobic008G181801 Sobic006G045000--Sobic002G423600 Sobic003G378301 Sobic003G378301 Sobic006G045000--Sobic003G378301 Sobic006G045000--Sobic005G182701 Sobic006G045000--Sobic001G201800 Sobic006G045000--Sobic004G217700 Sobic005G085500--Sobic002G041800 Sobic005G085500--Sobic008G181801 Sobic005G085500--SobicK044407 Sobic005G085500--Sobic004G195800 Sobic005G085500--Sobic002G209100 Sobic005G085500--Sobic006G045000 Sobic005G085500--Sobic001G012000 Sobic005G085500--Sobic002G423600 Sobic005G085500--Sobic004G078600 Sobic002G209100--Sobic004G195800 Sobic002G209100--Sobic002G041800 Sobic002G209100--Sobic005G085500 Sobic010G120800 Sobic010G120800 Sobic002G209100--Sobic010G120800 Sobic002G209100--Sobic009G252100 Sobic002G209100--Sobic004G217700 Sobic002G271600 Sobic002G271600 Sobic002G209100--Sobic002G271600 Sobic002G209100--Sobic004G209500 Sobic002G257100 Sobic002G257100 Sobic002G209100--Sobic002G257100 Sobic002G349400--Sobic006G045000 Sobic002G349400--Sobic004G209500 Sobic002G349400--Sobic001G315800 Sobic002G349400--Sobic008G181801 Sobic005G226100 Sobic005G226100 Sobic002G349400--Sobic005G226100 Sobic009G241500 Sobic009G241500 Sobic002G349400--Sobic009G241500 Sobic002G349400--Sobic009G216050 Sobic002G253400 Sobic002G253400 Sobic002G349400--Sobic002G253400 Sobic001G320700 Sobic001G320700 Sobic002G349400--Sobic001G320700 Sobic002G423600--Sobic001G056400 Sobic002G423600--Sobic005G182701 Sobic002G423600--Sobic001G201800 Sobic002G423600--Sobic001G012000 Sobic002G423600--Sobic004G078600 Sobic002G423600--Sobic004G217700 Sobic002G423600--Sobic007G055600 Sobic002G423600--SobicK044407 Sobic002G423600--Sobic006G045000 Sobic004G195800--Sobic002G209100 Sobic004G195800--Sobic002G041800 Sobic004G195800--Sobic005G085500 Sobic004G195800--Sobic009G252100 Sobic004G195800--Sobic010G120800 Sobic004G195800--Sobic004G217700 Sobic004G195800--Sobic001G201800 Sobic004G187300 Sobic004G187300 Sobic004G195800--Sobic004G187300 Sobic005G193600 Sobic005G193600 Sobic004G195800--Sobic005G193600
Octagon: transcription factors


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