Gene annotation
Transcriptome id Sobic.002G271600.1
Synonym RABA3, ATRABA3, ATRAB-A3, Sb02g030540
Functional annotation ras-related protein, putative, expressed
UniProt C5X647
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF345
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G01200 : RAB GTPase homolog A3
RAP-DB (Rice) LOC_Os09g35860.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a037063 , Zm00025a047731 , Zm00025a038760 , Zm00025a008978 , Zm00025a028122 , Zm00025a017900 , Zm00025a043281
Brachypodium KQK09101 , KQJ98137 , KQK12193 , KQK06841 , KQJ98073
Barley HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU5Hr1G080990.1 , HORVU5Hr1G080990.3 , HORVU5Hr1G080990.2 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8
Wheat TraesCS3B02G272300 , TraesCS4A02G343500 , TraesCS3B02G277200 , TraesCS5D02G321800 , TraesCS5D02G529500 , TraesCS5B02G316300 , TraesCS5A02G315700 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS3D02G244500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G014600 transferase family protein, putative, expressed -
2 Sobic.002G209100 glutamate receptor, putative, expressed -
3 Sobic.002G041800 gibberellin receptor GID1L2, putative, expressed -
4 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
5 Sobic.001G145050 - -
6 Sobic.009G205600 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
7 Sobic.006G053700 ACT domain containing protein, expressed -
8 Sobic.004G195800 heavy metal associated domain containing protein, expressed -
9 Sobic.002G366100 NAD dependent epimerase/dehydratase family protein, putative, expressed -
10 Sobic.005G085500 - -
11 Sobic.003G151800 expressed protein -
12 Sobic.010G120800 Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed -
13 Sobic.008G142600 amino acid permease family protein, putative, expressed -
14 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
15 Sobic.004G078600 lipoxygenase, putative, expressed K00454: lipoxygenase
16 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
17 Sobic.001G321600 dehydration response related protein, putative, expressed -
18 Sobic.003G402200 sensitivity to red light reduced protein 1, putative, expressed -
19 Sobic.003G284300 expressed protein -
20 Sobic.006G060800 basic proline-rich protein, putative, expressed -


Gene co-expression network
sample Sobic002G271600 Sobic002G271600 Sobic007G014600 Sobic007G014600 Sobic002G271600--Sobic007G014600 Sobic002G209100 Sobic002G209100 Sobic002G271600--Sobic002G209100 Sobic002G041800 Sobic002G041800 Sobic002G271600--Sobic002G041800 Sobic004G217700 Sobic004G217700 Sobic002G271600--Sobic004G217700 Sobic001G145050 Sobic001G145050 Sobic002G271600--Sobic001G145050 Sobic009G205600 Sobic009G205600 Sobic002G271600--Sobic009G205600 Sobic006G053700 Sobic006G053700 Sobic002G271600--Sobic006G053700 Sobic004G195800 Sobic004G195800 Sobic002G271600--Sobic004G195800 Sobic002G366100 Sobic002G366100 Sobic002G271600--Sobic002G366100 Sobic007G014600--Sobic002G271600 Sobic004G096300 Sobic004G096300 Sobic007G014600--Sobic004G096300 Sobic007G014600--Sobic006G053700 Sobic001G030500 Sobic001G030500 Sobic007G014600--Sobic001G030500 Sobic007G014600--Sobic002G209100 Sobic007G014600--Sobic009G205600 Sobic003G255100 Sobic003G255100 Sobic007G014600--Sobic003G255100 Sobic006G152500 Sobic006G152500 Sobic007G014600--Sobic006G152500 Sobic003G284300 Sobic003G284300 Sobic007G014600--Sobic003G284300 Sobic002G209100--Sobic004G195800 Sobic002G209100--Sobic002G041800 Sobic005G085500 Sobic005G085500 Sobic002G209100--Sobic005G085500 Sobic010G120800 Sobic010G120800 Sobic002G209100--Sobic010G120800 Sobic009G252100 Sobic009G252100 Sobic002G209100--Sobic009G252100 Sobic002G209100--Sobic004G217700 Sobic002G209100--Sobic002G271600 Sobic004G209500 Sobic004G209500 Sobic002G209100--Sobic004G209500 Sobic002G257100 Sobic002G257100 Sobic002G209100--Sobic002G257100 Sobic002G041800--Sobic005G085500 Sobic004G078600 Sobic004G078600 Sobic002G041800--Sobic004G078600 Sobic002G423600 Sobic002G423600 Sobic002G041800--Sobic002G423600 Sobic002G041800--Sobic004G195800 Sobic002G041800--Sobic009G252100 Sobic002G041800--Sobic004G217700 Sobic002G041800--Sobic002G209100 Sobic006G060800 Sobic006G060800 Sobic002G041800--Sobic006G060800 Sobic001G201800 Sobic001G201800 Sobic002G041800--Sobic001G201800 Sobic004G217700--Sobic002G423600 Sobic001G056500 Sobic001G056500 Sobic004G217700--Sobic001G056500 Sobic001G056400 Sobic001G056400 Sobic004G217700--Sobic001G056400 Sobic003G378301 Sobic003G378301 Sobic004G217700--Sobic003G378301 Sobic005G182701 Sobic005G182701 Sobic004G217700--Sobic005G182701 SobicK044407 SobicK044407 Sobic004G217700--SobicK044407 Sobic006G045000 Sobic006G045000 Sobic004G217700--Sobic006G045000 Sobic001G410450 Sobic001G410450 Sobic004G217700--Sobic001G410450 Sobic004G217700--Sobic002G041800 Sobic009G255100 Sobic009G255100 Sobic001G145050--Sobic009G255100 Sobic001G145050--Sobic002G041800 Sobic001G145050--Sobic002G366100 Sobic001G145050--Sobic006G060800 Sobic003G402200 Sobic003G402200 Sobic001G145050--Sobic003G402200 Sobic001G145050--Sobic004G078600 Sobic001G145050--Sobic005G085500 Sobic001G145050--Sobic002G271600 Sobic001G145050--Sobic002G209100 Sobic009G205600--Sobic004G217700 Sobic009G205600--Sobic003G402200 Sobic009G205600--Sobic002G271600 Sobic009G205600--Sobic001G410450 Sobic009G205600--Sobic007G014600 Sobic009G205600--Sobic004G195800 Sobic009G205600--Sobic002G209100 Sobic009G205600--Sobic006G060800 Sobic004G187300 Sobic004G187300 Sobic009G205600--Sobic004G187300 Sobic006G053700--Sobic004G096300 Sobic010G172200 Sobic010G172200 Sobic006G053700--Sobic010G172200 Sobic006G053700--Sobic007G014600 Sobic009G213400 Sobic009G213400 Sobic006G053700--Sobic009G213400 Sobic003G264901 Sobic003G264901 Sobic006G053700--Sobic003G264901 Sobic006G053700--Sobic002G209100 Sobic006G053700--Sobic002G271600 Sobic001G005500 Sobic001G005500 Sobic006G053700--Sobic001G005500 Sobic007G191900 Sobic007G191900 Sobic006G053700--Sobic007G191900 Sobic004G195800--Sobic002G209100 Sobic004G195800--Sobic002G041800 Sobic004G195800--Sobic005G085500 Sobic004G195800--Sobic009G252100 Sobic004G195800--Sobic010G120800 Sobic004G195800--Sobic004G217700 Sobic004G195800--Sobic001G201800 Sobic004G195800--Sobic004G187300 Sobic005G193600 Sobic005G193600 Sobic004G195800--Sobic005G193600 Sobic002G195700 Sobic002G195700 Sobic002G366100--Sobic002G195700 Sobic002G366100--Sobic001G145050 Sobic002G366100--Sobic001G005500 Sobic002G366100--Sobic009G255100 Sobic002G366100--Sobic006G060800 Sobic001G321600 Sobic001G321600 Sobic002G366100--Sobic001G321600 Sobic005G021600 Sobic005G021600 Sobic002G366100--Sobic005G021600 Sobic004G068700 Sobic004G068700 Sobic002G366100--Sobic004G068700 Sobic001G404500 Sobic001G404500 Sobic002G366100--Sobic001G404500
Octagon: transcription factors


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